Item talk:Q57312
From geokb
{
"USGS Publications Warehouse": {
"schema": {
"@context": "https://schema.org",
"@type": "CreativeWork",
"additionalType": "USGS Numbered Series",
"name": "Population genomic surveys for six rare plant species in San Diego County, California",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "ofr20181175",
"url": "https://pubs.usgs.gov/publication/ofr20181175"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 70200908
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.3133/ofr20181175",
"url": "https://doi.org/10.3133/ofr20181175"
}
],
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "Open-File Report"
}
],
"datePublished": "2018",
"dateModified": "2018-11-19",
"abstract": "San Diego County is a hotspot of biodiversity, situated at the intersection of the Baja peninsula, the California floristic province, and the desert southwest. This hotspot is characterized by a high number of rare and endemic species, which persist alongside a major urban epicenter. San Diego County has implemented a strategic management plan that identifies species, based on low numbers of occurrences or high level of threat, for which management practices are recommended. In creating a management plan for rare species, it is important to strike a balance between preserving locally adapted traits and maintaining genetic diversity, as species\u2019 ranges fluctuate in response to a changing climate and habitat fragmentation. This project, in partnership with the San Diego Natural History Museum, aims to provide a reference point for the current status of genetic diversity of rare plant species that will inform future preservation and restoration efforts. We focused on six threatened or endangered plant species: Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimum, Deinandra conjugens, Dicranostegia orcuttiana, and Monardella viminea. For each species, botanists from the San Diego Natural History Museum visited all known occurrences in San Diego County and collected leaf tissue for genetic and cytological analysis. We then developed a panel of genetic markers to estimate genetic diversity and population structure. This population genetic survey provided insight into the amount of genetic differentiation across each species\u2019 range, identified isolated occurrences potentially subject to inbreeding or genetic bottlenecks, and identified areas that are rich sources of allelic diversity. Finally, we convened a panel of experts to review results and compatible management options for each species. A summary of the management workshop is included in this report. Overall, we found low genetic differentiation among occurrences across the San Diego region for all species, with the exception of A. ilicifolia. Relative inbreeding was low and consistent across sites, and genetic diversity across sites was variable, with noted exceptions. These findings allow for a wide array of management options that are compatible with panmictic population structure in five of the six surveyed species.",
"description": "vii, 61 p.",
"publisher": {
"@type": "Organization",
"name": "U.S. Geological Survey"
},
"author": [
{
"@type": "Person",
"name": "Vandergast, Amy G. avandergast@usgs.gov",
"givenName": "Amy G.",
"familyName": "Vandergast",
"email": "avandergast@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-7835-6571",
"url": "https://orcid.org/0000-0002-7835-6571"
},
"affiliation": [
{
"@type": "Organization",
"name": "Western Ecological Research Center",
"url": "https://www.usgs.gov/centers/werc"
}
]
},
{
"@type": "Person",
"name": "Milano, Elizabeth R.",
"givenName": "Elizabeth R.",
"familyName": "Milano",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0003-4143-9303",
"url": "https://orcid.org/0000-0003-4143-9303"
},
"affiliation": [
{
"@type": "Organization",
"name": "Western Ecological Research Center",
"url": "https://www.usgs.gov/centers/werc"
}
]
}
],
"funder": [
{
"@type": "Organization",
"name": "Western Ecological Research Center",
"url": "https://www.usgs.gov/centers/werc"
}
],
"spatialCoverage": [
{
"@type": "Place",
"additionalType": "country",
"name": "United States",
"url": "https://geonames.org/4074035"
},
{
"@type": "Place",
"additionalType": "state",
"name": "California"
},
{
"@type": "Place",
"additionalType": "state",
"name": "San Diego County"
}
]
}
},
"OpenAlex": {
"abstract_inverted_index": {
"First": [
0
],
"posted": [
1
],
"November": [
2
],
"19,": [
3
],
"2018": [
4
],
"For": [
5,
191
],
"additional": [
6
],
"information,": [
7
],
"contact:": [
8
],
"Director,Western": [
9
],
"Ecological": [
10
],
"Research": [
11
],
"CenterU.S.": [
12
],
"Geological": [
13
],
"Survey3020": [
14
],
"State": [
15
],
"University": [
16
],
"Drive": [
17
],
"EastSacramento,": [
18
],
"California": [
19,
38
],
"95819": [
20
],
"San": [
21,
65,
137,
197,
207,
308
],
"Diego": [
22,
66,
138,
198,
208,
309
],
"County": [
23,
67,
209
],
"is": [
24,
47,
103,
293
],
"a": [
25,
50,
61,
70,
96,
107,
125,
145,
222,
273,
342
],
"hotspot": [
26,
46
],
"of": [
27,
33,
53,
81,
86,
152,
155,
224,
243,
267,
275,
289,
317,
345,
357
],
"biodiversity,": [
28
],
"situated": [
29
],
"at": [
30
],
"the": [
31,
34,
37,
42,
136,
149,
196,
241,
290,
307,
315,
358
],
"intersection": [
32
],
"Baja": [
35
],
"peninsula,": [
36
],
"floristic": [
39
],
"province,": [
40
],
"and": [
41,
55,
114,
128,
164,
188,
210,
216,
231,
260,
280,
324,
328
],
"desert": [
43
],
"southwest.": [
44
],
"This": [
45,
131,
234
],
"characterized": [
48
],
"by": [
49
],
"high": [
51,
84
],
"number": [
52
],
"rare": [
54,
100,
156
],
"endemic": [
56
],
"species,": [
57,
76,
101,
193,
313
],
"which": [
58,
89
],
"persist": [
59
],
"alongside": [
60
],
"major": [
62
],
"urban": [
63
],
"epicenter.": [
64
],
"has": [
68
],
"implemented": [
69
],
"strategic": [
71
],
"management": [
72,
90,
97,
282,
291,
346
],
"plan": [
73,
98
],
"that": [
74,
159,
263,
348
],
"identifies": [
75
],
"based": [
77
],
"on": [
78,
169
],
"low": [
79,
301,
323
],
"numbers": [
80
],
"occurrences": [
82,
205,
252,
305
],
"or": [
83,
172,
257
],
"level": [
85
],
"threat,": [
87
],
"for": [
88,
99,
148,
214,
284,
311,
341
],
"practices": [
91
],
"are": [
92,
264,
349
],
"recommended.": [
93
],
"In": [
94
],
"creating": [
95
],
"it": [
102
],
"important": [
104
],
"to": [
105,
124,
143,
227,
255,
277
],
"strike": [
106
],
"balance": [
108
],
"between": [
109
],
"preserving": [
110
],
"locally": [
111
],
"adapted": [
112
],
"traits": [
113
],
"maintaining": [
115
],
"genetic": [
116,
153,
215,
225,
229,
236,
244,
258,
302,
329
],
"diversity,": [
117
],
"as": [
118
],
"species\u2019": [
119,
248
],
"ranges": [
120
],
"fluctuate": [
121
],
"in": [
122,
133,
206,
295,
355
],
"response": [
123
],
"changing": [
126
],
"climate": [
127
],
"habitat": [
129
],
"fragmentation.": [
130
],
"project,": [
132
],
"partnership": [
134
],
"with": [
135,
314,
335,
351
],
"Natural": [
139,
199
],
"History": [
140,
200
],
"Museum,": [
141
],
"aims": [
142
],
"provide": [
144
],
"reference": [
146
],
"point": [
147
],
"current": [
150
],
"status": [
151
],
"diversity": [
154,
230,
330
],
"plant": [
157,
174
],
"species": [
158
],
"will": [
160
],
"inform": [
161
],
"future": [
162
],
"preservation": [
163
],
"restoration": [
165
],
"efforts.": [
166
],
"We": [
167,
219
],
"focused": [
168
],
"six": [
170,
359
],
"threatened": [
171
],
"endangered": [
173
],
"species:": [
175
],
"Acanthomintha": [
176
],
"ilicifolia,": [
177
],
"Baccharis": [
178
],
"vanessae,": [
179
],
"Chloropyron": [
180
],
"maritimum": [
181
],
"ssp.": [
182
],
"maritimum,": [
183
],
"Deinandra": [
184
],
"conjugens,": [
185
],
"Dicranostegia": [
186
],
"orcuttiana,": [
187
],
"Monardella": [
189
],
"viminea.": [
190
],
"each": [
192,
247,
285
],
"botanists": [
194
],
"from": [
195
],
"Museum": [
201
],
"visited": [
202
],
"all": [
203,
312
],
"known": [
204
],
"collected": [
211
],
"leaf": [
212
],
"tissue": [
213
],
"cytological": [
217
],
"analysis.": [
218
],
"then": [
220
],
"developed": [
221
],
"panel": [
223,
274
],
"markers": [
226
],
"estimate": [
228
],
"population": [
232,
235,
353
],
"structure.": [
233
],
"survey": [
237
],
"provided": [
238
],
"insight": [
239
],
"into": [
240
],
"amount": [
242
],
"differentiation": [
245,
303
],
"across": [
246,
306,
326,
331
],
"range,": [
249
],
"identified": [
250,
261
],
"isolated": [
251
],
"potentially": [
253
],
"subject": [
254
],
"inbreeding": [
256,
321
],
"bottlenecks,": [
259
],
"areas": [
262
],
"rich": [
265
],
"sources": [
266
],
"allelic": [
268
],
"diversity.": [
269
],
"Finally,": [
270
],
"we": [
271,
299
],
"convened": [
272
],
"experts": [
276
],
"review": [
278
],
"results": [
279
],
"compatible": [
281,
350
],
"options": [
283,
347
],
"species.": [
286,
361
],
"A": [
287
],
"summary": [
288
],
"workshop": [
292
],
"included": [
294
],
"this": [
296
],
"report.": [
297
],
"Overall,": [
298
],
"found": [
300
],
"among": [
304
],
"region": [
310
],
"exception": [
316
],
"A.": [
318
],
"ilicifolia.": [
319
],
"Relative": [
320
],
"was": [
322,
333
],
"consistent": [
325
],
"sites,": [
327
],
"sites": [
332
],
"variable,": [
334
],
"noted": [
336
],
"exceptions.": [
337
],
"These": [
338
],
"findings": [
339
],
"allow": [
340
],
"wide": [
343
],
"array": [
344
],
"panmictic": [
352
],
"structure": [
354
],
"five": [
356
],
"surveyed": [
360
]
},
"apc_list": null,
"apc_paid": null,
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5055026747",
"display_name": "Elizabeth R. Milano",
"orcid": "https://orcid.org/0000-0003-4143-9303"
},
"institutions": [],
"countries": [],
"is_corresponding": false,
"raw_author_name": "Elizabeth R. Milano",
"raw_affiliation_strings": [],
"affiliations": []
},
{
"author_position": "last",
"author": {
"id": "https://openalex.org/A5049634384",
"display_name": "Amy G. Vandergast",
"orcid": "https://orcid.org/0000-0002-7835-6571"
},
"institutions": [],
"countries": [],
"is_corresponding": false,
"raw_author_name": "Amy G. Vandergast",
"raw_affiliation_strings": [],
"affiliations": []
}
],
"best_oa_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.3133/ofr20181175",
"pdf_url": "https://pubs.usgs.gov/of/2018/1175/ofr20181175.pdf",
"source": {
"id": "https://openalex.org/S4210194219",
"display_name": "Antarctica A Keystone in a Changing World",
"issn_l": "0196-1497",
"issn": [
"0196-1497",
"2331-1258",
"2332-4899"
],
"is_oa": true,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310316088",
"host_organization_name": "United States Department of the Interior",
"host_organization_lineage": [
"https://openalex.org/P4310316088"
],
"host_organization_lineage_names": [
"United States Department of the Interior"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"biblio": {
"volume": null,
"issue": null,
"first_page": null,
"last_page": null
},
"citation_normalized_percentile": {
"value": 0.446627,
"is_in_top_1_percent": false,
"is_in_top_10_percent": false
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W2901465276",
"cited_by_count": 1,
"cited_by_percentile_year": {
"min": 64,
"max": 72
},
"concepts": [
{
"id": "https://openalex.org/c205649164",
"wikidata": "https://www.wikidata.org/wiki/Q1071",
"display_name": "Geography",
"level": 0,
"score": 0.65079653,
"qid": "Q158983"
},
{
"id": "https://openalex.org/c24518262",
"wikidata": "https://www.wikidata.org/wiki/Q16197023",
"display_name": "Threatened species",
"level": 3,
"score": 0.6361613,
"qid": null
},
{
"id": "https://openalex.org/c179345059",
"wikidata": "https://www.wikidata.org/wiki/Q11394",
"display_name": "Endangered species",
"level": 3,
"score": 0.5589468,
"qid": "Q159126"
},
{
"id": "https://openalex.org/c81977670",
"wikidata": "https://www.wikidata.org/wiki/Q585259",
"display_name": "Genetic diversity",
"level": 3,
"score": 0.5580702,
"qid": "Q159152"
},
{
"id": "https://openalex.org/c2908647359",
"wikidata": "https://www.wikidata.org/wiki/Q2625603",
"display_name": "Population",
"level": 2,
"score": 0.5373323,
"qid": null
},
{
"id": "https://openalex.org/c18903297",
"wikidata": "https://www.wikidata.org/wiki/Q7150",
"display_name": "Ecology",
"level": 1,
"score": 0.49784732,
"qid": "Q158972"
},
{
"id": "https://openalex.org/c130217890",
"wikidata": "https://www.wikidata.org/wiki/Q47041",
"display_name": "Biodiversity",
"level": 2,
"score": 0.47926304,
"qid": "Q159072"
},
{
"id": "https://openalex.org/c185933670",
"wikidata": "https://www.wikidata.org/wiki/Q52105",
"display_name": "Habitat",
"level": 2,
"score": 0.4404622,
"qid": null
},
{
"id": "https://openalex.org/c137664086",
"wikidata": "https://www.wikidata.org/wiki/Q123452",
"display_name": "Endemism",
"level": 2,
"score": 0.43188322,
"qid": null
},
{
"id": "https://openalex.org/c64229544",
"wikidata": "https://www.wikidata.org/wiki/Q552431",
"display_name": "Habitat destruction",
"level": 3,
"score": 0.42643988,
"qid": null
},
{
"id": "https://openalex.org/c180395843",
"wikidata": "https://www.wikidata.org/wiki/Q3503448",
"display_name": "Rare species",
"level": 3,
"score": 0.421646,
"qid": null
},
{
"id": "https://openalex.org/c86803240",
"wikidata": "https://www.wikidata.org/wiki/Q420",
"display_name": "Biology",
"level": 0,
"score": 0.33136755,
"qid": "Q158998"
},
{
"id": "https://openalex.org/c149923435",
"wikidata": "https://www.wikidata.org/wiki/Q37732",
"display_name": "Demography",
"level": 1,
"score": 0.09887794,
"qid": "Q166262"
},
{
"id": "https://openalex.org/c144024400",
"wikidata": "https://www.wikidata.org/wiki/Q21201",
"display_name": "Sociology",
"level": 0,
"score": 0.0,
"qid": "Q226182"
}
],
"corresponding_author_ids": [],
"corresponding_institution_ids": [],
"countries_distinct_count": 0,
"counts_by_year": [
{
"year": 2023,
"cited_by_count": 1
}
],
"created_date": "2018-11-29",
"datasets": [],
"display_name": "Population genomic surveys for six rare plant species in San Diego County, California",
"doi": "https://doi.org/10.3133/ofr20181175",
"fulltext_origin": "pdf",
"fwci": 0.0,
"grants": [],
"has_fulltext": true,
"id": "https://openalex.org/W2901465276",
"ids": {
"openalex": "https://openalex.org/W2901465276",
"doi": "https://doi.org/10.3133/ofr20181175",
"mag": "2901465276"
},
"indexed_in": [
"crossref"
],
"institutions_distinct_count": 0,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/ecosystem",
"display_name": "Ecosystem",
"score": 0.47682
},
{
"id": "https://openalex.org/keywords/endemism",
"display_name": "Endemism",
"score": 0.43188322
},
{
"id": "https://openalex.org/keywords/rare-species",
"display_name": "Rare species",
"score": 0.421646
}
],
"language": "en",
"locations": [
{
"is_oa": true,
"landing_page_url": "https://doi.org/10.3133/ofr20181175",
"pdf_url": "https://pubs.usgs.gov/of/2018/1175/ofr20181175.pdf",
"source": {
"id": "https://openalex.org/S4210194219",
"display_name": "Antarctica A Keystone in a Changing World",
"issn_l": "0196-1497",
"issn": [
"0196-1497",
"2331-1258",
"2332-4899"
],
"is_oa": true,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310316088",
"host_organization_name": "United States Department of the Interior",
"host_organization_lineage": [
"https://openalex.org/P4310316088"
],
"host_organization_lineage_names": [
"United States Department of the Interior"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
}
],
"locations_count": 1,
"mesh": [],
"ngrams_url": "https://api.openalex.org/works/W2901465276/ngrams",
"open_access": {
"is_oa": true,
"oa_status": "gold",
"oa_url": "https://pubs.usgs.gov/of/2018/1175/ofr20181175.pdf",
"any_repository_has_fulltext": false
},
"primary_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.3133/ofr20181175",
"pdf_url": "https://pubs.usgs.gov/of/2018/1175/ofr20181175.pdf",
"source": {
"id": "https://openalex.org/S4210194219",
"display_name": "Antarctica A Keystone in a Changing World",
"issn_l": "0196-1497",
"issn": [
"0196-1497",
"2331-1258",
"2332-4899"
],
"is_oa": true,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310316088",
"host_organization_name": "United States Department of the Interior",
"host_organization_lineage": [
"https://openalex.org/P4310316088"
],
"host_organization_lineage_names": [
"United States Department of the Interior"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"primary_topic": {
"id": "https://openalex.org/T13388",
"display_name": "Factors Affecting Sagebrush Ecosystems and Wildlife Conservation",
"score": 0.9968,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
"publication_date": "2018-01-01",
"publication_year": 2018,
"referenced_works": [
"https://openalex.org/W1566107011",
"https://openalex.org/W1968423560",
"https://openalex.org/W1970939676",
"https://openalex.org/W1971212249",
"https://openalex.org/W1974234250",
"https://openalex.org/W2016037098",
"https://openalex.org/W2035164312",
"https://openalex.org/W2058987334",
"https://openalex.org/W2062343749",
"https://openalex.org/W2066362596",
"https://openalex.org/W2092673641",
"https://openalex.org/W2108524369",
"https://openalex.org/W2113291597",
"https://openalex.org/W2120405557",
"https://openalex.org/W2121955404",
"https://openalex.org/W2136949012",
"https://openalex.org/W2138092548",
"https://openalex.org/W2142398490",
"https://openalex.org/W2161184021",
"https://openalex.org/W2327243108",
"https://openalex.org/W2466535924",
"https://openalex.org/W2550401036",
"https://openalex.org/W2752423670",
"https://openalex.org/W2774863993",
"https://openalex.org/W2782678399",
"https://openalex.org/W2797994489",
"https://openalex.org/W2905738514",
"https://openalex.org/W4235769225",
"https://openalex.org/W4238619938",
"https://openalex.org/W4242233416",
"https://openalex.org/W4299498251",
"https://openalex.org/W4390807889"
],
"referenced_works_count": 32,
"related_works": [
"https://openalex.org/W4317425787",
"https://openalex.org/W2988966637",
"https://openalex.org/W2554982890",
"https://openalex.org/W2385090299",
"https://openalex.org/W2383810679",
"https://openalex.org/W2380161170",
"https://openalex.org/W2369750823",
"https://openalex.org/W2369318201",
"https://openalex.org/W2362751583",
"https://openalex.org/W1992042399"
],
"sustainable_development_goals": [
{
"score": 0.46,
"display_name": "Life on land",
"id": "https://metadata.un.org/sdg/15"
}
],
"title": "Population genomic surveys for six rare plant species in San Diego County, California",
"topics": [
{
"id": "https://openalex.org/T13388",
"display_name": "Factors Affecting Sagebrush Ecosystems and Wildlife Conservation",
"score": 0.9968,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
{
"id": "https://openalex.org/T13015",
"display_name": "Diversity and Applications of Cyperus Species",
"score": 0.9959,
"subfield": {
"id": "https://openalex.org/subfields/1110",
"display_name": "Plant Science"
},
"field": {
"id": "https://openalex.org/fields/11",
"display_name": "Agricultural and Biological Sciences"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
},
{
"id": "https://openalex.org/T10895",
"display_name": "Species Distribution Modeling and Climate Change Impacts",
"score": 0.9912,
"subfield": {
"id": "https://openalex.org/subfields/2302",
"display_name": "Ecological Modeling"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-09T07:53:49.356729",
"versions": [],
"qid": "Q57312"
}
}
