Item talk:Q304716
From geokb
{
"USGS Publications Warehouse": {
"@context": "https://schema.org",
"@type": "Article",
"additionalType": "Journal Article",
"name": "Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "70199929",
"url": "https://pubs.usgs.gov/publication/70199929"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 70199929
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.1371/journal.pcbi.1006468",
"url": "https://doi.org/10.1371/journal.pcbi.1006468"
}
],
"journal": {
"@type": "Periodical",
"name": "PLOS Computational Biology",
"volumeNumber": "14",
"issueNumber": "10"
},
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "PLOS Computational Biology"
}
],
"datePublished": "2018",
"dateModified": "2018-10-04",
"abstract": "Biologists and environmental scientists now routinely solve computational problems that were unimaginable a generation ago. Examples include processing geospatial data, analyzing -omics data, and running large-scale simulations. Conventional desktop computing cannot handle these tasks when they are large, and high-performance computing is not always available nor the most appropriate solution for all computationally intense problems. High-throughput computing (HTC) is one method for handling computationally intense research. In contrast to high-performance computing, which uses a single \"supercomputer,\" HTC can distribute tasks over many computers (e.g., idle desktop computers, dedicated servers, or cloud-based resources). HTC facilities exist at many academic and government institutes and are relatively easy to create from commodity hardware. Additionally, consortia such as Open Science Grid facilitate HTC, and commercial entities sell cloud-based solutions for researchers who lack HTC at their institution. We provide an introduction to HTC for biologists and environmental scientists. Our examples from biology and the environmental sciences use HTCondor, an open source HTC system.",
"description": "e1006468; 8 p.",
"publisher": {
"@type": "Organization",
"name": "PLOS"
},
"author": [
{
"@type": "Person",
"name": "Weiser, Emily L.",
"givenName": "Emily L.",
"familyName": "Weiser",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0003-1598-659X",
"url": "https://orcid.org/0000-0003-1598-659X"
},
"affiliation": [
{
"@type": "Organization",
"name": "Alaska Science Center Ecosystems",
"url": "https://www.usgs.gov/centers/alaska-science-center"
}
]
},
{
"@type": "Person",
"name": "Erickson, Richard A. rerickson@usgs.gov",
"givenName": "Richard A.",
"familyName": "Erickson",
"email": "rerickson@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0003-4649-482X",
"url": "https://orcid.org/0000-0003-4649-482X"
},
"affiliation": [
{
"@type": "Organization",
"name": "Upper Midwest Environmental Sciences Center",
"url": "https://www.usgs.gov/centers/upper-midwest-environmental-sciences-center"
}
]
},
{
"@type": "Person",
"name": "Fienen, Michael N. mnfienen@usgs.gov",
"givenName": "Michael N.",
"familyName": "Fienen",
"email": "mnfienen@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-7756-4651",
"url": "https://orcid.org/0000-0002-7756-4651"
},
"affiliation": [
{
"@type": "Organization",
"name": "New York Water Science Center",
"url": "https://www.usgs.gov/centers/new-york-water-science-center"
}
]
},
{
"@type": "Person",
"name": "McCalla, S. Grace smccalla@usgs.gov",
"givenName": "S. Grace",
"familyName": "McCalla",
"email": "smccalla@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0003-4292-8694",
"url": "https://orcid.org/0000-0003-4292-8694"
},
"affiliation": [
{
"@type": "Organization",
"name": "Upper Midwest Environmental Sciences Center",
"url": "https://www.usgs.gov/centers/upper-midwest-environmental-sciences-center"
}
]
},
{
"@type": "Person",
"name": "Bower, Melvin L.",
"givenName": "Melvin L.",
"familyName": "Bower",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-4408-3771",
"url": "https://orcid.org/0000-0002-4408-3771"
},
"affiliation": [
{
"@type": "Organization",
"name": "Upper Midwest Environmental Sciences Center",
"url": "https://www.usgs.gov/centers/upper-midwest-environmental-sciences-center"
}
]
},
{
"@type": "Person",
"name": "Knudson, Jonathan M.",
"givenName": "Jonathan M.",
"familyName": "Knudson",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0003-4985-988X",
"url": "https://orcid.org/0000-0003-4985-988X"
},
"affiliation": [
{
"@type": "Organization",
"name": "Upper Midwest Environmental Sciences Center",
"url": "https://www.usgs.gov/centers/upper-midwest-environmental-sciences-center"
}
]
},
{
"@type": "Person",
"name": "Thain, Greg",
"givenName": "Greg",
"familyName": "Thain",
"affiliation": [
{
"@type": "Organization",
"name": "University of Wisconsin-Madison"
}
]
}
],
"funder": [
{
"@type": "Organization",
"name": "Upper Midwest Environmental Sciences Center",
"url": "https://www.usgs.gov/centers/upper-midwest-environmental-sciences-center"
}
]
},
"OpenAlex": {
"_id": "https://openalex.org/w2895413049",
"abstract_inverted_index": {
"Biologists": [
0
],
"and": [
1,
23,
38,
98,
101,
119,
141,
148
],
"environmental": [
2,
142,
150
],
"scientists": [
3
],
"now": [
4
],
"routinely": [
5
],
"solve": [
6
],
"computational": [
7
],
"problems": [
8
],
"that": [
9
],
"were": [
10
],
"unimaginable": [
11
],
"a": [
12,
73
],
"generation": [
13
],
"ago.": [
14
],
"Examples": [
15
],
"include": [
16
],
"processing": [
17
],
"geospatial": [
18
],
"data,": [
19,
22
],
"analyzing": [
20
],
"-omics": [
21
],
"running": [
24
],
"large-scale": [
25
],
"simulations.": [
26
],
"Conventional": [
27
],
"desktop": [
28,
85
],
"computing": [
29,
40,
56
],
"cannot": [
30
],
"handle": [
31
],
"these": [
32
],
"tasks": [
33,
79
],
"when": [
34
],
"they": [
35
],
"are": [
36,
102
],
"large,": [
37
],
"high-performance": [
39,
69
],
"is": [
41,
58
],
"not": [
42
],
"always": [
43
],
"available": [
44
],
"nor": [
45
],
"the": [
46,
149
],
"most": [
47
],
"appropriate": [
48
],
"solution": [
49
],
"for": [
50,
61,
125,
139
],
"all": [
51
],
"computationally": [
52,
63
],
"intense": [
53,
64
],
"problems.": [
54
],
"High-throughput": [
55
],
"(HTC)": [
57
],
"one": [
59
],
"method": [
60
],
"handling": [
62
],
"research.": [
65
],
"In": [
66
],
"contrast": [
67
],
"to": [
68,
105,
137
],
"computing,": [
70
],
"which": [
71
],
"uses": [
72
],
"single": [
74
],
"\"supercomputer,\"": [
75
],
"HTC": [
76,
92,
129,
138,
157
],
"can": [
77
],
"distribute": [
78
],
"over": [
80
],
"many": [
81,
96
],
"computers": [
82
],
"(e.g.,": [
83
],
"idle": [
84
],
"computers,": [
86
],
"dedicated": [
87
],
"servers,": [
88
],
"or": [
89
],
"cloud-based": [
90,
123
],
"resources).": [
91
],
"facilities": [
93
],
"exist": [
94
],
"at": [
95,
130
],
"academic": [
97
],
"government": [
99
],
"institutes": [
100
],
"relatively": [
103
],
"easy": [
104
],
"create": [
106
],
"from": [
107,
146
],
"commodity": [
108
],
"hardware.": [
109
],
"Additionally,": [
110
],
"consortia": [
111
],
"such": [
112
],
"as": [
113
],
"Open": [
114
],
"Science": [
115
],
"Grid": [
116
],
"facilitate": [
117
],
"HTC,": [
118
],
"commercial": [
120
],
"entities": [
121
],
"sell": [
122
],
"solutions": [
124
],
"researchers": [
126
],
"who": [
127
],
"lack": [
128
],
"their": [
131
],
"institution.": [
132
],
"We": [
133
],
"provide": [
134
],
"an": [
135,
154
],
"introduction": [
136
],
"biologists": [
140
],
"scientists.": [
143
],
"Our": [
144
],
"examples": [
145
],
"biology": [
147
],
"sciences": [
151
],
"use": [
152
],
"HTCondor,": [
153
],
"open": [
155
],
"source": [
156
],
"system.": [
158
]
},
"apc_list": {
"value": 2655,
"currency": "USD",
"value_usd": 2655,
"provenance": "doaj"
},
"apc_paid": {
"value": 2655,
"currency": "USD",
"value_usd": 2655,
"provenance": "doaj"
},
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5015009630",
"display_name": "Richard A. Erickson",
"orcid": "https://orcid.org/0000-0003-4649-482X"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": true,
"raw_author_name": "Richard A. Erickson",
"raw_affiliation_strings": [
"Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America"
],
"affiliations": [
{
"raw_affiliation_string": "Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5081887696",
"display_name": "Michael N. Fienen",
"orcid": "https://orcid.org/0000-0002-7756-4651"
},
"institutions": [
{
"id": "https://openalex.org/I1304256225",
"display_name": "University of Wisconsin System",
"ror": "https://ror.org/03ydkyb10",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I1304256225"
]
},
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Michael N. Fienen",
"raw_affiliation_strings": [
"Wisconsin Water Science Center, United States Geological Survey, Middelton, Wisconsin, United States of America"
],
"affiliations": [
{
"raw_affiliation_string": "Wisconsin Water Science Center, United States Geological Survey, Middelton, Wisconsin, United States of America",
"institution_ids": [
"https://openalex.org/I1304256225",
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5004972917",
"display_name": "Sunnie Grace McCalla",
"orcid": "https://orcid.org/0000-0003-4292-8694"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "S. Grace McCalla",
"raw_affiliation_strings": [
"Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America"
],
"affiliations": [
{
"raw_affiliation_string": "Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5072485658",
"display_name": "Emily L. Weiser",
"orcid": "https://orcid.org/0000-0003-1598-659X"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Emily L. Weiser",
"raw_affiliation_strings": [
"Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America"
],
"affiliations": [
{
"raw_affiliation_string": "Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5089424480",
"display_name": "Melvin L. Bower",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Melvin L. Bower",
"raw_affiliation_strings": [
"Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America"
],
"affiliations": [
{
"raw_affiliation_string": "Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5011390684",
"display_name": "Jonathan M. Knudson",
"orcid": "https://orcid.org/0000-0003-4985-988X"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Jonathan M. Knudson",
"raw_affiliation_strings": [
"Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America"
],
"affiliations": [
{
"raw_affiliation_string": "Upper Midwest Environmental Sciences Center, United States Geological Survey, La Crosse, Wisconsin, United States of America",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "last",
"author": {
"id": "https://openalex.org/A5007933028",
"display_name": "Greg Thain",
"orcid": "https://orcid.org/0000-0002-2296-3735"
},
"institutions": [
{
"id": "https://openalex.org/I135310074",
"display_name": "University of Wisconsin\u2013Madison",
"ror": "https://ror.org/01y2jtd41",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I135310074"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Greg Thain",
"raw_affiliation_strings": [
"Department of Computer Science, University of Wisconsin\u2013Madison, Madison, Winconsin, United States of America"
],
"affiliations": [
{
"raw_affiliation_string": "Department of Computer Science, University of Wisconsin\u2013Madison, Madison, Winconsin, United States of America",
"institution_ids": [
"https://openalex.org/I135310074"
]
}
]
}
],
"best_oa_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1371/journal.pcbi.1006468",
"pdf_url": "https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006468&type=printable",
"source": {
"id": "https://openalex.org/S86033158",
"display_name": "PLoS Computational Biology",
"issn_l": "1553-734X",
"issn": [
"1553-734X",
"1553-7358"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310316756",
"host_organization_name": "International Society for Computational Biology",
"host_organization_lineage": [
"https://openalex.org/P4310316756"
],
"host_organization_lineage_names": [
"International Society for Computational Biology"
],
"type": "journal"
},
"license": "public-domain",
"license_id": "https://openalex.org/licenses/public-domain",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"biblio": {
"volume": "14",
"issue": "10",
"first_page": "e1006468",
"last_page": "e1006468"
},
"citation_normalized_percentile": {
"value": 0.968295,
"is_in_top_1_percent": false,
"is_in_top_10_percent": true
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W2895413049",
"cited_by_count": 19,
"cited_by_percentile_year": {
"min": 91,
"max": 92
},
"concepts": [
{
"id": "https://openalex.org/C79974875",
"wikidata": "https://www.wikidata.org/wiki/Q483639",
"display_name": "Cloud computing",
"level": 2,
"score": 0.7771113
},
{
"id": "https://openalex.org/C41008148",
"wikidata": "https://www.wikidata.org/wiki/Q21198",
"display_name": "Computer science",
"level": 0,
"score": 0.7724123
},
{
"id": "https://openalex.org/C83283714",
"wikidata": "https://www.wikidata.org/wiki/Q121117",
"display_name": "Supercomputer",
"level": 2,
"score": 0.70269465
},
{
"id": "https://openalex.org/C9770341",
"wikidata": "https://www.wikidata.org/wiki/Q1938983",
"display_name": "Geospatial analysis",
"level": 2,
"score": 0.5767562
},
{
"id": "https://openalex.org/C2522767166",
"wikidata": "https://www.wikidata.org/wiki/Q2374463",
"display_name": "Data science",
"level": 1,
"score": 0.5500943
},
{
"id": "https://openalex.org/C70429105",
"wikidata": "https://www.wikidata.org/wiki/Q249999",
"display_name": "Grid computing",
"level": 3,
"score": 0.53964096
},
{
"id": "https://openalex.org/C93996380",
"wikidata": "https://www.wikidata.org/wiki/Q44127",
"display_name": "Server",
"level": 2,
"score": 0.50144815
},
{
"id": "https://openalex.org/C85106507",
"wikidata": "https://www.wikidata.org/wiki/Q1188445",
"display_name": "Utility computing",
"level": 4,
"score": 0.412912
},
{
"id": "https://openalex.org/C187691185",
"wikidata": "https://www.wikidata.org/wiki/Q2020720",
"display_name": "Grid",
"level": 2,
"score": 0.3412617
},
{
"id": "https://openalex.org/C136764020",
"wikidata": "https://www.wikidata.org/wiki/Q466",
"display_name": "World Wide Web",
"level": 1,
"score": 0.27663958
},
{
"id": "https://openalex.org/C111919701",
"wikidata": "https://www.wikidata.org/wiki/Q9135",
"display_name": "Operating system",
"level": 1,
"score": 0.25928095
},
{
"id": "https://openalex.org/C184842701",
"wikidata": "https://www.wikidata.org/wiki/Q370563",
"display_name": "Cloud computing security",
"level": 3,
"score": 0.10492617
},
{
"id": "https://openalex.org/C2524010",
"wikidata": "https://www.wikidata.org/wiki/Q8087",
"display_name": "Geometry",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C58640448",
"wikidata": "https://www.wikidata.org/wiki/Q42515",
"display_name": "Cartography",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C33923547",
"wikidata": "https://www.wikidata.org/wiki/Q395",
"display_name": "Mathematics",
"level": 0,
"score": 0.0
},
{
"id": "https://openalex.org/C205649164",
"wikidata": "https://www.wikidata.org/wiki/Q1071",
"display_name": "Geography",
"level": 0,
"score": 0.0
}
],
"corresponding_author_ids": [
"https://openalex.org/A5015009630"
],
"corresponding_institution_ids": [
"https://openalex.org/I1286329397"
],
"countries_distinct_count": 1,
"counts_by_year": [
{
"year": 2024,
"cited_by_count": 1
},
{
"year": 2023,
"cited_by_count": 3
},
{
"year": 2022,
"cited_by_count": 2
},
{
"year": 2021,
"cited_by_count": 3
},
{
"year": 2020,
"cited_by_count": 3
},
{
"year": 2019,
"cited_by_count": 2
}
],
"created_date": "2018-10-12",
"datasets": [],
"display_name": "Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor",
"doi": "https://doi.org/10.1371/journal.pcbi.1006468",
"fulltext_origin": "pdf",
"fwci": 4.362,
"grants": [],
"has_fulltext": true,
"id": "https://openalex.org/W2895413049",
"ids": {
"openalex": "https://openalex.org/W2895413049",
"doi": "https://doi.org/10.1371/journal.pcbi.1006468",
"mag": "2895413049",
"pmid": "https://pubmed.ncbi.nlm.nih.gov/30281592",
"pmcid": "https://www.ncbi.nlm.nih.gov/pmc/articles/6169842"
},
"indexed_in": [
"crossref",
"doaj",
"pubmed"
],
"institutions_distinct_count": 3,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/high-performance-computing",
"display_name": "High-Performance Computing",
"score": 0.591416
},
{
"id": "https://openalex.org/keywords/task-scheduling",
"display_name": "Task Scheduling",
"score": 0.55592
},
{
"id": "https://openalex.org/keywords/computational-research",
"display_name": "Computational Research",
"score": 0.532599
},
{
"id": "https://openalex.org/keywords/data-sharing",
"display_name": "Data Sharing",
"score": 0.512185
},
{
"id": "https://openalex.org/keywords/scientific-workflows",
"display_name": "Scientific Workflows",
"score": 0.50488
}
],
"language": "en",
"locations": [
{
"is_oa": true,
"landing_page_url": "https://doi.org/10.1371/journal.pcbi.1006468",
"pdf_url": "https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006468&type=printable",
"source": {
"id": "https://openalex.org/S86033158",
"display_name": "PLoS Computational Biology",
"issn_l": "1553-734X",
"issn": [
"1553-734X",
"1553-7358"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310316756",
"host_organization_name": "International Society for Computational Biology",
"host_organization_lineage": [
"https://openalex.org/P4310316756"
],
"host_organization_lineage_names": [
"International Society for Computational Biology"
],
"type": "journal"
},
"license": "public-domain",
"license_id": "https://openalex.org/licenses/public-domain",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": false,
"landing_page_url": "https://doaj.org/article/631bb3e31e154bc3a3ba71443c8f4aaf",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4306401280",
"display_name": "DOAJ (DOAJ: Directory of Open Access Journals)",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": null,
"host_organization_name": null,
"host_organization_lineage": [],
"host_organization_lineage_names": [],
"type": "repository"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
},
{
"is_oa": true,
"landing_page_url": "https://europepmc.org/articles/pmc6169842",
"pdf_url": "https://europepmc.org/articles/pmc6169842?pdf=render",
"source": {
"id": "https://openalex.org/S4306400806",
"display_name": "Europe PMC (PubMed Central)",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1303153112",
"host_organization_name": "European Bioinformatics Institute",
"host_organization_lineage": [
"https://openalex.org/I1303153112"
],
"host_organization_lineage_names": [
"European Bioinformatics Institute"
],
"type": "repository"
},
"license": "public-domain",
"license_id": "https://openalex.org/licenses/public-domain",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": true,
"landing_page_url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6169842",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S2764455111",
"display_name": "PubMed Central",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1299303238",
"host_organization_name": "National Institutes of Health",
"host_organization_lineage": [
"https://openalex.org/I1299303238"
],
"host_organization_lineage_names": [
"National Institutes of Health"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": false,
"landing_page_url": "https://pubmed.ncbi.nlm.nih.gov/30281592",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4306525036",
"display_name": "PubMed",
"issn_l": null,
"issn": null,
"is_oa": false,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1299303238",
"host_organization_name": "National Institutes of Health",
"host_organization_lineage": [
"https://openalex.org/I1299303238"
],
"host_organization_lineage_names": [
"National Institutes of Health"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
}
],
"locations_count": 5,
"mesh": [
{
"descriptor_ui": "D019295",
"descriptor_name": "Computational Biology",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": true
},
{
"descriptor_ui": "D003205",
"descriptor_name": "Computing Methodologies",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": true
},
{
"descriptor_ui": "D004463",
"descriptor_name": "Ecology",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": true
},
{
"descriptor_ui": "D012984",
"descriptor_name": "Software",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": true
},
{
"descriptor_ui": "D057166",
"descriptor_name": "High-Throughput Screening Assays",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D006801",
"descriptor_name": "Humans",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D020407",
"descriptor_name": "Internet",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D012106",
"descriptor_name": "Research",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
}
],
"ngrams_url": "https://api.openalex.org/works/W2895413049/ngrams",
"open_access": {
"is_oa": true,
"oa_status": "gold",
"oa_url": "https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006468&type=printable",
"any_repository_has_fulltext": true
},
"primary_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1371/journal.pcbi.1006468",
"pdf_url": "https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006468&type=printable",
"source": {
"id": "https://openalex.org/S86033158",
"display_name": "PLoS Computational Biology",
"issn_l": "1553-734X",
"issn": [
"1553-734X",
"1553-7358"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310316756",
"host_organization_name": "International Society for Computational Biology",
"host_organization_lineage": [
"https://openalex.org/P4310316756"
],
"host_organization_lineage_names": [
"International Society for Computational Biology"
],
"type": "journal"
},
"license": "public-domain",
"license_id": "https://openalex.org/licenses/public-domain",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"primary_topic": {
"id": "https://openalex.org/T11986",
"display_name": "Management and Reproducibility of Scientific Workflows",
"score": 0.9996,
"subfield": {
"id": "https://openalex.org/subfields/1802",
"display_name": "Information Systems and Management"
},
"field": {
"id": "https://openalex.org/fields/18",
"display_name": "Decision Sciences"
},
"domain": {
"id": "https://openalex.org/domains/2",
"display_name": "Social Sciences"
}
},
"publication_date": "2018-10-03",
"publication_year": 2018,
"referenced_works": [
"https://openalex.org/W1505551852",
"https://openalex.org/W1523963696",
"https://openalex.org/W1527999181",
"https://openalex.org/W1596790865",
"https://openalex.org/W1858542512",
"https://openalex.org/W2007841777",
"https://openalex.org/W2008952232",
"https://openalex.org/W2029857819",
"https://openalex.org/W2041025920",
"https://openalex.org/W2095339232",
"https://openalex.org/W2100524057",
"https://openalex.org/W2113048356",
"https://openalex.org/W2119151963",
"https://openalex.org/W2124088880",
"https://openalex.org/W2128019986",
"https://openalex.org/W2134420993",
"https://openalex.org/W2140332639",
"https://openalex.org/W2148317584",
"https://openalex.org/W2163816695",
"https://openalex.org/W2169969573",
"https://openalex.org/W2171071998",
"https://openalex.org/W2188325323",
"https://openalex.org/W2255898562",
"https://openalex.org/W2269714094",
"https://openalex.org/W2296335794",
"https://openalex.org/W2399769480",
"https://openalex.org/W2498289784",
"https://openalex.org/W2550582318",
"https://openalex.org/W2604148521"
],
"referenced_works_count": 29,
"related_works": [
"https://openalex.org/W4322712946",
"https://openalex.org/W4297792185",
"https://openalex.org/W2992164351",
"https://openalex.org/W2363418456",
"https://openalex.org/W2359083166",
"https://openalex.org/W2337331320",
"https://openalex.org/W2144355776",
"https://openalex.org/W2125771852",
"https://openalex.org/W2038726588",
"https://openalex.org/W1585052355"
],
"sustainable_development_goals": [],
"title": "Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor",
"topics": [
{
"id": "https://openalex.org/T11986",
"display_name": "Management and Reproducibility of Scientific Workflows",
"score": 0.9996,
"subfield": {
"id": "https://openalex.org/subfields/1802",
"display_name": "Information Systems and Management"
},
"field": {
"id": "https://openalex.org/fields/18",
"display_name": "Decision Sciences"
},
"domain": {
"id": "https://openalex.org/domains/2",
"display_name": "Social Sciences"
}
},
{
"id": "https://openalex.org/T10715",
"display_name": "Distributed Grid Computing Systems",
"score": 0.9996,
"subfield": {
"id": "https://openalex.org/subfields/1705",
"display_name": "Computer Networks and Communications"
},
"field": {
"id": "https://openalex.org/fields/17",
"display_name": "Computer Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
{
"id": "https://openalex.org/T11937",
"display_name": "Data Sharing and Stewardship in Science",
"score": 0.9792,
"subfield": {
"id": "https://openalex.org/subfields/1710",
"display_name": "Information Systems"
},
"field": {
"id": "https://openalex.org/fields/17",
"display_name": "Computer Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-15T15:19:47.950205",
"versions": []
}
}
