Item talk:Q275845

{

 "DOI": {
   "doi": "10.5066/f7g44nhf",
   "prefix": "10.5066",
   "suffix": "f7g44nhf",
   "identifiers": [],
   "alternateIdentifiers": [],
   "creators": [
     {
       "name": "Hofmeister, Erik K",
       "nameType": "Personal",
       "givenName": "Erik K",
       "familyName": "Hofmeister",
       "affiliation": [],
       "nameIdentifiers": [
         {
           "schemeUri": "https://orcid.org",
           "nameIdentifier": "https://orcid.org/0000-0002-6360-3912",
           "nameIdentifierScheme": "ORCID"
         }
       ]
     },
     {
       "name": "Balakrishnan, Christopher N",
       "nameType": "Personal",
       "givenName": "Christopher N",
       "familyName": "Balakrishnan",
       "affiliation": [],
       "nameIdentifiers": [
         {
           "schemeUri": "https://orcid.org",
           "nameIdentifier": "https://orcid.org/0000-0002-0788-0659",
           "nameIdentifierScheme": "ORCID"
         }
       ]
     },
     {
       "name": "Newhouse, Daniel J",
       "nameType": "Personal",
       "givenName": "Daniel J",
       "familyName": "Newhouse",
       "affiliation": [],
       "nameIdentifiers": [
         {
           "schemeUri": "https://orcid.org",
           "nameIdentifier": "https://orcid.org/0000-0002-7694-0475",
           "nameIdentifierScheme": "ORCID"
         }
       ]
     }
   ],
   "titles": [
     {
       "title": "Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function: Data"
     }
   ],
   "publisher": "U.S. Geological Survey",
   "container": {},
   "publicationYear": 2017,
   "subjects": [
     {
       "subject": "Transcriptome, RNAseq, West Nile virus"
     }
   ],
   "contributors": [],
   "dates": [
     {
       "date": "2013/2016",
       "dateType": "Collected"
     },
     {
       "date": "2017",
       "dateType": "Issued"
     }
   ],
   "language": null,
   "types": {
     "ris": "DATA",
     "bibtex": "misc",
     "citeproc": "dataset",
     "schemaOrg": "Dataset",
     "resourceType": "Dataset",
     "resourceTypeGeneral": "Dataset"
   },
   "relatedIdentifiers": [
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       "relationType": "IsCitedBy",
       "relatedIdentifier": "10.1101/103564",
       "relatedIdentifierType": "DOI"
     }
   ],
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   "version": null,
   "rightsList": [],
   "descriptions": [
     {
       "description": "The data set contains paired-end, 100 nucleotide long RNA sequencing reads for each sample. Raw sequencing reads ranged from 18-30million reads per sample. Quality trimmed reads were mapped to the Zebra Finch reference genome with an average of 79.0-80.8% mapping rate, corresponding to 18,618 Ensembl gene IDs. Of these, 14,114 genes averaged at least 5 mapped reads across all samples and were utilized for differential expression (DE) analyses. DE analyzed two ways: as pairwise comparisons between treatments to identify specific genes with DEseq2 and as a time course grouping genes into expression paths with EBSeqHMM.",
       "descriptionType": "Abstract"
     }
   ],
   "geoLocations": [],
   "fundingReferences": [],
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