Item talk:Q262796
From geokb
{
"USGS Publications Warehouse": { "@context": "https://schema.org", "@type": "CreativeWork", "additionalType": "Book Chapter", "name": "Genetic processes facilitating pathogen emergence", "identifier": [ { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse IndexID", "value": "70230022", "url": "https://pubs.usgs.gov/publication/70230022" }, { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse Internal ID", "value": 70230022 }, { "@type": "PropertyValue", "propertyID": "DOI", "value": "10.4018/978-1-7998-7935-0.ch002", "url": "https://doi.org/10.4018/978-1-7998-7935-0.ch002" } ], "inLanguage": "en", "datePublished": "2022", "dateModified": "2022-03-25", "abstract": "The goal of biosecurity is to minimize the risk of introduction and transmission of infectious diseases to people, animals, and plants. This is achieved by accurately identifying pathogens and instituting appropriate methods to prevent their introduction, reemergence, and/or spread. However, disease is dynamic, and biosecurity needs to continually change to keep pace as pathogens evolve. As described in this chapter, a basic understanding of evolution is central in considering how genetic changes and their associated phenotypes can alter the disease presentation of pathogens. In addition, evolution leaves a trail of genetic information that can be leveraged to inform biosecurity because the spatiotemporal patterns of these past changes provide clues as to how the pathogen might be spreading. This chapter aims to provide insights into how various genetic alterations occur, the background on how these are informative for biosecurity, and illustrations of applications to real-world examples. Evolution underlies the abilities of pathogens to adapt, emerge, and to cause epidemics.", "description": "22 p.", "publisher": { "@type": "Organization", "name": "IGI Global" }, "author": [ { "@type": "Person", "name": "Ip, Hon S.", "givenName": "Hon S.", "familyName": "Ip", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0003-4844-7533", "url": "https://orcid.org/0000-0003-4844-7533" }, "affiliation": [ { "@type": "Organization", "name": "National Wildlife Health Center", "url": "https://www.usgs.gov/centers/nwhc" } ] }, { "@type": "Person", "name": "Chang, J. H.", "givenName": "J. H.", "familyName": "Chang", "affiliation": [ { "@type": "Organization", "name": "Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA" } ] }, { "@type": "Person", "name": "Brown, C. E.", "givenName": "C. E.", "familyName": "Brown" }, { "@type": "Person", "name": "Grunwald, N. J.", "givenName": "N. J.", "familyName": "Grunwald", "affiliation": [ { "@type": "Organization", "name": "Horticultural Crops Research Lab, USDA Agricultural Research Service, Corvallis, OR, USA" } ] } ], "editor": [ { "@type": "Person", "name": "Bailey, Keith L.", "givenName": "Keith L.", "familyName": "Bailey" }, { "@type": "Person", "name": "Cardwell, Kitty F.", "givenName": "Kitty F.", "familyName": "Cardwell", "affiliation": [ { "@type": "Organization", "name": "Oklahoma State University" } ] } ], "funder": [ { "@type": "Organization", "name": "National Wildlife Health Center", "url": "https://www.usgs.gov/centers/nwhc" } ] }, "OpenAlex": { "_id": "https://openalex.org/w4213146003", "abstract_inverted_index": { "The": [ 0 ], "goal": [ 1 ], "of": [ 2, 9, 13, 63, 81, 89, 103, 140, 149 ], "biosecurity": [ 3, 44, 98 ], "is": [ 4, 22, 41, 65 ], "to": [ 5, 16, 32, 46, 49, 96, 110, 120, 142, 151, 155 ], "minimize": [ 6 ], "the": [ 7, 78, 100, 112, 129, 147 ], "risk": [ 8 ], "introduction": [ 10 ], "and": [ 11, 19, 28, 43, 72, 138, 154 ], "transmission": [ 12 ], "infectious": [ 14 ], "diseases": [ 15 ], "people,": [ 17 ], "animals,": [ 18 ], "plants.": [ 20 ], "This": [ 21, 117 ], "achieved": [ 23 ], "by": [ 24 ], "accurately": [ 25 ], "identifying": [ 26 ], "pathogens": [ 27, 53, 150 ], "instituting": [ 29 ], "appropriate": [ 30 ], "methods": [ 31 ], "prevent": [ 33 ], "their": [ 34, 73 ], "introduction,": [ 35 ], "reemergence,": [ 36 ], "and/or": [ 37 ], "spread.": [ 38 ], "However,": [ 39 ], "disease": [ 40, 79 ], "dynamic,": [ 42 ], "needs": [ 45 ], "continually": [ 47 ], "change": [ 48 ], "keep": [ 50 ], "pace": [ 51 ], "as": [ 52, 109 ], "evolve.": [ 54 ], "As": [ 55 ], "described": [ 56 ], "in": [ 57, 67 ], "this": [ 58 ], "chapter,": [ 59 ], "a": [ 60, 87 ], "basic": [ 61 ], "understanding": [ 62 ], "evolution": [ 64, 85 ], "central": [ 66 ], "considering": [ 68 ], "how": [ 69, 111, 124, 132 ], "genetic": [ 70, 90, 126 ], "changes": [ 71, 106 ], "associated": [ 74 ], "phenotypes": [ 75 ], "can": [ 76, 93 ], "alter": [ 77 ], "presentation": [ 80 ], "pathogens.": [ 82 ], "In": [ 83 ], "addition,": [ 84 ], "leaves": [ 86 ], "trail": [ 88 ], "information": [ 91 ], "that": [ 92 ], "be": [ 94, 115 ], "leveraged": [ 95 ], "inform": [ 97 ], "because": [ 99 ], "spatiotemporal": [ 101 ], "patterns": [ 102 ], "these": [ 104, 133 ], "past": [ 105 ], "provide": [ 107, 121 ], "clues": [ 108 ], "pathogen": [ 113 ], "might": [ 114 ], "spreading.": [ 116 ], "chapter": [ 118 ], "aims": [ 119 ], "insights": [ 122 ], "into": [ 123 ], "various": [ 125 ], "alterations": [ 127 ], "occur,": [ 128 ], "background": [ 130 ], "on": [ 131 ], "are": [ 134 ], "informative": [ 135 ], "for": [ 136 ], "biosecurity,": [ 137 ], "illustrations": [ 139 ], "applications": [ 141 ], "real-world": [ 143 ], "examples.": [ 144 ], "Evolution": [ 145 ], "underlies": [ 146 ], "abilities": [ 148 ], "adapt,": [ 152 ], "emerge,": [ 153 ], "cause": [ 156 ], "epidemics.": [ 157 ] }, "apc_list": null, "apc_paid": null, "authorships": [ { "author_position": "first", "author": { "id": "https://openalex.org/A5074498953", "display_name": "Niklaus J. Gr\u00fcnwald", "orcid": "https://orcid.org/0000-0003-1656-7602" }, "institutions": [ { "id": "https://openalex.org/I1312222531", "display_name": "Agricultural Research Service", "ror": "https://ror.org/02d2m2044", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1312222531", "https://openalex.org/I1336096307" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Niklaus Grunwald", "raw_affiliation_strings": [ "USDA ARS, USA" ], "affiliations": [ { "raw_affiliation_string": "USDA ARS, USA", "institution_ids": [ "https://openalex.org/I1312222531" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5053570533", "display_name": "Corrie Brown", "orcid": null }, "institutions": [ { "id": "https://openalex.org/I165733156", "display_name": "University of Georgia", "ror": "https://ror.org/00te3t702", "country_code": "US", "type": "education", "lineage": [ "https://openalex.org/I165733156" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Corrie Brown", "raw_affiliation_strings": [ "University of Georgia, USA" ], "affiliations": [ { "raw_affiliation_string": "University of Georgia, USA", "institution_ids": [ "https://openalex.org/I165733156" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5084311164", "display_name": "Hon S. Ip", "orcid": "https://orcid.org/0000-0003-4844-7533" }, "institutions": [ { "id": "https://openalex.org/I1286329397", "display_name": "United States Geological Survey", "ror": "https://ror.org/035a68863", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Hon S. Ip", "raw_affiliation_strings": [ "United States Geological Survey, USA" ], "affiliations": [ { "raw_affiliation_string": "United States Geological Survey, USA", "institution_ids": [ "https://openalex.org/I1286329397" ] } ] }, { "author_position": "last", "author": { "id": "https://openalex.org/A5041306627", "display_name": "Jeff H. Chang", "orcid": "https://orcid.org/0000-0002-1833-0695" }, "institutions": [ { "id": "https://openalex.org/I131249849", "display_name": "Oregon State University", "ror": "https://ror.org/00ysfqy60", "country_code": "US", "type": "education", "lineage": [ "https://openalex.org/I131249849" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Jeff H. Chang", "raw_affiliation_strings": [ "Oregon State University, USA" ], "affiliations": [ { "raw_affiliation_string": "Oregon State University, USA", "institution_ids": [ "https://openalex.org/I131249849" ] } ] } ], "best_oa_location": null, "biblio": { "volume": null, "issue": null, "first_page": "32", "last_page": "53" }, "citation_normalized_percentile": null, "cited_by_api_url": "https://api.openalex.org/works?filter=cites:W4213146003", "cited_by_count": 0, "cited_by_percentile_year": { "min": 0, "max": 63 }, "concepts": [ { "id": "https://openalex.org/C2781368420", "wikidata": "https://www.wikidata.org/wiki/Q803874", "display_name": "Biosecurity", "level": 2, "score": 0.98878396 }, { "id": "https://openalex.org/C2777526511", "wikidata": "https://www.wikidata.org/wiki/Q691543", "display_name": "Pace", "level": 2, "score": 0.6852273 }, { "id": "https://openalex.org/C86803240", "wikidata": "https://www.wikidata.org/wiki/Q420", "display_name": "Biology", "level": 0, "score": 0.55597395 }, { "id": "https://openalex.org/C524204448", "wikidata": "https://www.wikidata.org/wiki/Q788926", "display_name": "Infectious disease (medical specialty)", "level": 3, "score": 0.47753036 }, { "id": "https://openalex.org/C2776460866", "wikidata": "https://www.wikidata.org/wiki/Q170065", "display_name": "Pathogen", "level": 2, "score": 0.4490321 }, { "id": "https://openalex.org/C2779134260", "wikidata": "https://www.wikidata.org/wiki/Q12136", "display_name": "Disease", "level": 2, "score": 0.43979716 }, { "id": "https://openalex.org/C116834253", "wikidata": "https://www.wikidata.org/wiki/Q2039217", "display_name": "Identification (biology)", "level": 2, "score": 0.42242157 }, { "id": "https://openalex.org/C112930515", "wikidata": "https://www.wikidata.org/wiki/Q4389547", "display_name": "Risk analysis (engineering)", "level": 1, "score": 0.37364817 }, { "id": "https://openalex.org/C78458016", "wikidata": "https://www.wikidata.org/wiki/Q840400", "display_name": "Evolutionary biology", "level": 1, "score": 0.372361 }, { "id": "https://openalex.org/C2522767166", "wikidata": "https://www.wikidata.org/wiki/Q2374463", "display_name": "Data science", "level": 1, "score": 0.34941262 }, { "id": "https://openalex.org/C205649164", "wikidata": "https://www.wikidata.org/wiki/Q1071", "display_name": "Geography", "level": 0, "score": 0.23996681 }, { "id": "https://openalex.org/C18903297", "wikidata": "https://www.wikidata.org/wiki/Q7150", "display_name": "Ecology", "level": 1, "score": 0.21231732 }, { "id": "https://openalex.org/C41008148", "wikidata": "https://www.wikidata.org/wiki/Q21198", "display_name": "Computer science", "level": 0, "score": 0.18639886 }, { "id": "https://openalex.org/C54355233", "wikidata": "https://www.wikidata.org/wiki/Q7162", "display_name": "Genetics", "level": 1, "score": 0.15711078 }, { "id": "https://openalex.org/C71924100", "wikidata": "https://www.wikidata.org/wiki/Q11190", "display_name": "Medicine", "level": 0, "score": 0.13824794 }, { "id": "https://openalex.org/C13280743", "wikidata": "https://www.wikidata.org/wiki/Q131089", "display_name": "Geodesy", "level": 1, "score": 0.0 }, { "id": "https://openalex.org/C142724271", "wikidata": "https://www.wikidata.org/wiki/Q7208", "display_name": "Pathology", "level": 1, "score": 0.0 } ], "corresponding_author_ids": [], "corresponding_institution_ids": [], "countries_distinct_count": 1, "counts_by_year": [], "created_date": "2022-02-24", "datasets": [], "display_name": "Genetic Processes Facilitating Pathogen Emergence", "doi": "https://doi.org/10.4018/978-1-7998-7935-0.ch002", "fwci": 0.0, "grants": [], "has_fulltext": false, "id": "https://openalex.org/W4213146003", "ids": { "openalex": "https://openalex.org/W4213146003", "doi": "https://doi.org/10.4018/978-1-7998-7935-0.ch002" }, "indexed_in": [ "crossref" ], "institutions_distinct_count": 4, "is_paratext": false, "is_retracted": false, "keywords": [ { "id": "https://openalex.org/keywords/biosecurity", "display_name": "Biosecurity", "score": 0.98878396 }, { "id": "https://openalex.org/keywords/pace", "display_name": "Pace", "score": 0.6852273 }, { "id": "https://openalex.org/keywords/genetic-dynamics", "display_name": "Genetic Dynamics", "score": 0.506138 }, { "id": "https://openalex.org/keywords/identification", "display_name": "Identification (biology)", "score": 0.42242157 } ], "language": "en", "locations": [ { "is_oa": false, "landing_page_url": "https://doi.org/10.4018/978-1-7998-7935-0.ch002", "pdf_url": null, "source": { "id": "https://openalex.org/S4210195151", "display_name": "Advances in human services and public health (AHSPH) book series", "issn_l": "2475-6571", "issn": [ "2475-6571", "2475-658X" ], "is_oa": false, "is_in_doaj": false, "is_core": true, "host_organization": "https://openalex.org/P4310320561", "host_organization_name": "Brill", "host_organization_lineage": [ "https://openalex.org/P4310320561" ], "host_organization_lineage_names": [ "Brill" ], "type": "book series" }, "license": null, "license_id": null, "version": null, "is_accepted": false, "is_published": false } ], "locations_count": 1, "mesh": [], "ngrams_url": "https://api.openalex.org/works/W4213146003/ngrams", "open_access": { "is_oa": false, "oa_status": "closed", "oa_url": null, "any_repository_has_fulltext": false }, "primary_location": { "is_oa": false, "landing_page_url": "https://doi.org/10.4018/978-1-7998-7935-0.ch002", "pdf_url": null, "source": { "id": "https://openalex.org/S4210195151", "display_name": "Advances in human services and public health (AHSPH) book series", "issn_l": "2475-6571", "issn": [ "2475-6571", "2475-658X" ], "is_oa": false, "is_in_doaj": false, "is_core": true, "host_organization": "https://openalex.org/P4310320561", "host_organization_name": "Brill", "host_organization_lineage": [ "https://openalex.org/P4310320561" ], "host_organization_lineage_names": [ "Brill" ], "type": "book series" }, "license": null, "license_id": null, "version": null, "is_accepted": false, "is_published": false }, "primary_topic": { "id": "https://openalex.org/T10494", "display_name": "Viral RNA Silencing and Plant Immunity", "score": 0.9991, "subfield": { "id": "https://openalex.org/subfields/1110", "display_name": "Plant Science" }, "field": { "id": "https://openalex.org/fields/11", "display_name": "Agricultural and Biological Sciences" }, "domain": { "id": "https://openalex.org/domains/1", "display_name": "Life Sciences" } }, "publication_date": "2022-01-01", "publication_year": 2022, "referenced_works": [ "https://openalex.org/W1850674401", "https://openalex.org/W1962422158", "https://openalex.org/W1968141772", "https://openalex.org/W1970959262", "https://openalex.org/W1991831546", "https://openalex.org/W2016279534", "https://openalex.org/W2021756174", "https://openalex.org/W2042409729", "https://openalex.org/W2049902812", "https://openalex.org/W2052558548", "https://openalex.org/W2058598212", "https://openalex.org/W2071360937", "https://openalex.org/W2072760254", "https://openalex.org/W2085801947", "https://openalex.org/W2104484780", "https://openalex.org/W2111272682", "https://openalex.org/W2121096658", "https://openalex.org/W2122722323", "https://openalex.org/W2124073557", "https://openalex.org/W2124371255", "https://openalex.org/W2124668496", "https://openalex.org/W2146122014", "https://openalex.org/W2151277839", "https://openalex.org/W2151624979", "https://openalex.org/W2161711040", "https://openalex.org/W2162515800", "https://openalex.org/W2166882574", "https://openalex.org/W2169796310", "https://openalex.org/W2195557721", "https://openalex.org/W2243986007", "https://openalex.org/W2287849783", "https://openalex.org/W2335878612", "https://openalex.org/W2412727661", "https://openalex.org/W2508804886", "https://openalex.org/W2567173904", "https://openalex.org/W2803637930", "https://openalex.org/W2906204693", "https://openalex.org/W2949693119", "https://openalex.org/W2990518758", "https://openalex.org/W3032971392", "https://openalex.org/W3038575106", "https://openalex.org/W3039901154", "https://openalex.org/W3088522917", "https://openalex.org/W3092146374", "https://openalex.org/W805154366" ], "referenced_works_count": 45, "related_works": [ "https://openalex.org/W4388916713", "https://openalex.org/W4384639906", "https://openalex.org/W4306923164", "https://openalex.org/W4303579302", "https://openalex.org/W3208778598", "https://openalex.org/W3118590551", "https://openalex.org/W3043274410", "https://openalex.org/W2992062717", "https://openalex.org/W2270788023", "https://openalex.org/W1490143392" ], "sustainable_development_goals": [ { "score": 0.79, "id": "https://metadata.un.org/sdg/3", "display_name": "Good health and well-being" } ], "title": "Genetic Processes Facilitating Pathogen Emergence", "topics": [ { "id": "https://openalex.org/T10494", "display_name": "Viral RNA Silencing and Plant Immunity", "score": 0.9991, "subfield": { "id": "https://openalex.org/subfields/1110", "display_name": "Plant Science" }, "field": { "id": "https://openalex.org/fields/11", "display_name": "Agricultural and Biological Sciences" }, "domain": { "id": "https://openalex.org/domains/1", "display_name": "Life Sciences" } }, { "id": "https://openalex.org/T11048", "display_name": "Ecology and Evolution of Viruses in Ecosystems", "score": 0.9948, "subfield": { "id": "https://openalex.org/subfields/2303", "display_name": "Ecology" }, "field": { "id": "https://openalex.org/fields/23", "display_name": "Environmental Science" }, "domain": { "id": "https://openalex.org/domains/3", "display_name": "Physical Sciences" } }, { "id": "https://openalex.org/T11764", "display_name": "Evolutionary Dynamics of Genetic Adaptation and Mutation", "score": 0.9925, "subfield": { "id": "https://openalex.org/subfields/1311", "display_name": "Genetics" }, "field": { "id": "https://openalex.org/fields/13", "display_name": "Biochemistry, Genetics and Molecular Biology" }, "domain": { "id": "https://openalex.org/domains/1", "display_name": "Life Sciences" } } ], "type": "book-chapter", "type_crossref": "book-chapter", "updated_date": "2024-08-14T08:53:29.903880", "versions": [] }
}