Item talk:Q261564
From geokb
{
"USGS Publications Warehouse": { "@context": "https://schema.org", "@type": "Article", "additionalType": "Journal Article", "name": "Earth history and the passerine superradiation", "identifier": [ { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse IndexID", "value": "70203387", "url": "https://pubs.usgs.gov/publication/70203387" }, { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse Internal ID", "value": 70203387 }, { "@type": "PropertyValue", "propertyID": "DOI", "value": "10.1073/pnas.1813206116", "url": "https://doi.org/10.1073/pnas.1813206116" } ], "journal": { "@type": "Periodical", "name": "PNAS", "volumeNumber": "116", "issueNumber": "16" }, "inLanguage": "en", "isPartOf": [ { "@type": "CreativeWorkSeries", "name": "PNAS" } ], "datePublished": "2019", "dateModified": "2019-06-25", "abstract": "Avian diversification has been influenced by global climate change, plate tectonic movements, and mass extinction events. However, the impact of these factors on the diversification of the hyperdiverse perching birds (passerines) is unclear because family level relationships are unresolved and the timing of splitting events among lineages is uncertain. We analyzed DNA data from 4060 nuclear loci and 137 passerine families using concatenation and coalescent approaches to infer a comprehensive phylogenetic hypothesis that clarifies relationships among all passerine families. Then, we calibrated this phylogeny using 13 fossils to examine the effects of different events in Earth history on the timing and rate of passerine diversification. Our analyses reconcile passerine diversification with the fossil and geological records, suggest that passerines originated on the Australian landmass ~47 Ma, and show that subsequent dispersal and diversification of passerines was affected by a number of climatological and geological events, such as Oligocene glaciation and inundation of the New Zealand landmass. Although passerine diversification rates fluctuated throughout the Cenozoic, we find no link between the rate of passerine diversification and Cenozoic global temperature, and our analyses show that the increases in passerine diversification we observe are disconnected from the colonization of new continents. Taken together, these results suggest more complex mechanisms than temperature change or ecological opportunity have controlled macroscale patterns of passerine speciation.", "description": "12 p.", "publisher": { "@type": "Organization", "name": "National Academy of Sciences" }, "author": [ { "@type": "Person", "name": "Oliveros, Carl H", "givenName": "Carl H", "familyName": "Oliveros", "affiliation": [ { "@type": "Organization", "name": "LSU" } ] }, { "@type": "Person", "name": "Chesser, Terry tchesser@usgs.gov", "givenName": "Terry", "familyName": "Chesser", "email": "tchesser@usgs.gov", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0003-4389-7092", "url": "https://orcid.org/0000-0003-4389-7092" }, "affiliation": [ { "@type": "Organization", "name": "Patuxent Wildlife Research Center", "url": "https://www.usgs.gov/centers/pwrc" } ] }, { "@type": "Person", "name": "Field, Daniel J", "givenName": "Daniel J", "familyName": "Field", "affiliation": [ { "@type": "Organization", "name": "Univ. of Bath" } ] }, { "@type": "Person", "name": "Ksepka, Daniel T", "givenName": "Daniel T", "familyName": "Ksepka", "affiliation": [ { "@type": "Organization", "name": "Bruce Museum" } ] }, { "@type": "Person", "name": "Barker, F Keith", "givenName": "F Keith", "familyName": "Barker", "affiliation": [ { "@type": "Organization", "name": "Univ. of Minnesota" } ] }, { "@type": "Person", "name": "Aleixo, Alexandre", "givenName": "Alexandre", "familyName": "Aleixo", "affiliation": [ { "@type": "Organization", "name": "Goeldi Museum" } ] }, { "@type": "Person", "name": "Andersen, Michael J", "givenName": "Michael J", "familyName": "Andersen", "affiliation": [ { "@type": "Organization", "name": "Univ New Mexico" } ] }, { "@type": "Person", "name": "Alstrom, Per", "givenName": "Per", "familyName": "Alstrom", "affiliation": [ { "@type": "Organization", "name": "Uppsala Univ." } ] }, { "@type": "Person", "name": "Benz, Brett W", "givenName": "Brett W", "familyName": "Benz", "affiliation": [ { "@type": "Organization", "name": "American Museum of Natural History" } ] }, { "@type": "Person", "name": "A. Townsend Peterson", "familyName": "A. Townsend Peterson", "affiliation": [ { "@type": "Organization", "name": "University of Kansas" } ] }, { "@type": "Person", "name": "Braun, Edward L", "givenName": "Edward L", "familyName": "Braun", "affiliation": [ { "@type": "Organization", "name": "Univ of Florida" } ] }, { "@type": "Person", "name": "Braun, Michael J", "givenName": "Michael J", "familyName": "Braun", "affiliation": [ { "@type": "Organization", "name": "Smithsonian Institution" } ] }, { "@type": "Person", "name": "Bravo, Gustavo A", "givenName": "Gustavo A", "familyName": "Bravo", "affiliation": [ { "@type": "Organization", "name": "Harvard Univ." } ] }, { "@type": "Person", "name": "Brumfield, Robb T", "givenName": "Robb T", "familyName": "Brumfield", "affiliation": [ { "@type": "Organization", "name": "LSU" } ] }, { "@type": "Person", "name": "Santiago Claramunt", "familyName": "Santiago Claramunt", "affiliation": [ { "@type": "Organization", "name": "Royal Ontario Museum" } ] }, { "@type": "Person", "name": "Joel Cracraft", "familyName": "Joel Cracraft", "affiliation": [ { "@type": "Organization", "name": "American Museum of Natural History" } ] }, { "@type": "Person", "name": "Andr\u00e9s M. Cuervo", "familyName": "Andr\u00e9s M. Cuervo", "affiliation": [ { "@type": "Organization", "name": "Humboldt Institute" } ] }, { "@type": "Person", "name": "Elizabeth P. Derryberry", "familyName": "Elizabeth P. Derryberry", "affiliation": [ { "@type": "Organization", "name": "University of Tennessee Knoxville" } ] }, { "@type": "Person", "name": "Travis C. Glenn", "familyName": "Travis C. Glenn", "affiliation": [ { "@type": "Organization", "name": "University of Georgia" } ] }, { "@type": "Person", "name": "Michael G. Harvey", "familyName": "Michael G. Harvey", "affiliation": [ { "@type": "Organization", "name": "University of Tennessee Knoxville" } ] }, { "@type": "Person", "name": "Peter A. Hosner", "familyName": "Peter A. Hosner", "affiliation": [ { "@type": "Organization", "name": "Smithsonian Institution" } ] }, { "@type": "Person", "name": "Leo Joseph", "familyName": "Leo Joseph", "affiliation": [ { "@type": "Organization", "name": "Australian National Wildlife Collection" } ] }, { "@type": "Person", "name": "Rebecca Kimball", "familyName": "Rebecca Kimball", "affiliation": [ { "@type": "Organization", "name": "University of Florida" } ] }, { "@type": "Person", "name": "Andrew L. Mack", "familyName": "Andrew L. Mack", "affiliation": [ { "@type": "Organization", "name": "Pennsylvania State University-Altoona" } ] }, { "@type": "Person", "name": "Colin M. Miskelly", "familyName": "Colin M. Miskelly", "affiliation": [ { "@type": "Organization", "name": "Museum of New Zealand Te Papa Tongarewa" } ] }, { "@type": "Person", "name": "Mark B. Robbins", "familyName": "Mark B. Robbins", "affiliation": [ { "@type": "Organization", "name": "University of Kansas" } ] }, { "@type": "Person", "name": "Frederick H. Sheldon", "familyName": "Frederick H. Sheldon", "affiliation": [ { "@type": "Organization", "name": "LSU" } ] }, { "@type": "Person", "name": "Lu\u00eds F\u00e1bio Silveira", "familyName": "Lu\u00eds F\u00e1bio Silveira", "affiliation": [ { "@type": "Organization", "name": "Museu de Zoologia da Universidade de S\u00e3o Paulo" } ] }, { "@type": "Person", "name": "Brian T. Smith", "familyName": "Brian T. Smith", "affiliation": [ { "@type": "Organization", "name": "American Museum of Natural History" } ] }, { "@type": "Person", "name": "Noor D. White", "familyName": "Noor D. White", "affiliation": [ { "@type": "Organization", "name": "Smithsonian Institution" } ] }, { "@type": "Person", "name": "Robert G. Moyle", "familyName": "Robert G. Moyle", "affiliation": [ { "@type": "Organization", "name": "University of Kansas" } ] }, { "@type": "Person", "name": "Brant C. Faircloth", "familyName": "Brant C. Faircloth", "affiliation": [ { "@type": "Organization", "name": "LSU" } ] } ], "funder": [ { "@type": "Organization", "name": "Patuxent Wildlife Research Center", "url": "https://www.usgs.gov/centers/pwrc" } ] }, "OpenAlex": { "_id": "https://openalex.org/W2931899952", "abstract_inverted_index": { "Avian": [ 0 ], "diversification": [ 1, 24, 109, 132, 158, 173, 187 ], "has": [ 2 ], "been": [ 3 ], "influenced": [ 4 ], "by": [ 5, 137 ], "global": [ 6, 176 ], "climate": [ 7 ], "change,": [ 8 ], "plate": [ 9 ], "tectonic": [ 10 ], "movements,": [ 11 ], "and": [ 12, 39, 57, 63, 100, 113, 126, 131, 142, 149, 174, 178 ], "mass": [ 13 ], "extinction": [ 14 ], "events.": [ 15 ], "However,": [ 16 ], "the": [ 17, 23, 26, 40, 89, 98, 111, 121, 152, 162, 169, 183, 194 ], "impact": [ 18 ], "of": [ 19, 25, 42, 91, 102, 133, 140, 151, 171, 196, 217 ], "these": [ 20, 201 ], "factors": [ 21 ], "on": [ 22, 97, 120 ], "hyperdiverse": [ 27 ], "perching": [ 28 ], "birds": [ 29 ], "(passerines)": [ 30 ], "is": [ 31, 47 ], "unclear": [ 32 ], "because": [ 33 ], "family": [ 34 ], "level": [ 35 ], "relationships": [ 36, 74 ], "are": [ 37, 191 ], "unresolved": [ 38 ], "timing": [ 41, 99 ], "splitting": [ 43 ], "events": [ 44, 93 ], "among": [ 45, 75 ], "lineages": [ 46 ], "uncertain.": [ 48 ], "We": [ 49 ], "analyzed": [ 50 ], "DNA": [ 51 ], "data": [ 52 ], "from": [ 53, 193 ], "4,060": [ 54 ], "nuclear": [ 55 ], "loci": [ 56 ], "137": [ 58 ], "passerine": [ 59, 77, 103, 108, 157, 172, 186, 218 ], "families": [ 60 ], "using": [ 61, 84 ], "concatenation": [ 62 ], "coalescent": [ 64 ], "approaches": [ 65 ], "to": [ 66, 87 ], "infer": [ 67 ], "a": [ 68, 138 ], "comprehensive": [ 69 ], "phylogenetic": [ 70 ], "hypothesis": [ 71 ], "that": [ 72, 117, 128, 182 ], "clarifies": [ 73 ], "all": [ 76 ], "families.": [ 78 ], "Then,": [ 79 ], "we": [ 80, 164, 189 ], "calibrated": [ 81 ], "this": [ 82 ], "phylogeny": [ 83 ], "13": [ 85 ], "fossils": [ 86 ], "examine": [ 88 ], "effects": [ 90 ], "different": [ 92 ], "in": [ 94, 185 ], "Earth": [ 95 ], "history": [ 96 ], "rate": [ 101, 170, 188 ], "diversification.": [ 104 ], "Our": [ 105 ], "analyses": [ 106, 180 ], "reconcile": [ 107 ], "with": [ 110 ], "fossil": [ 112 ], "geological": [ 114, 143 ], "records;": [ 115 ], "suggest": [ 116, 203 ], "passerines": [ 118, 134 ], "originated": [ 119 ], "Australian": [ 122 ], "landmass": [ 123 ], "\u223c47": [ 124 ], "Ma;": [ 125 ], "show": [ 127, 181 ], "subsequent": [ 129 ], "dispersal": [ 130 ], "was": [ 135 ], "affected": [ 136 ], "number": [ 139 ], "climatological": [ 141 ], "events,": [ 144 ], "such": [ 145 ], "as": [ 146 ], "Oligocene": [ 147 ], "glaciation": [ 148 ], "inundation": [ 150 ], "New": [ 153 ], "Zealand": [ 154 ], "landmass.": [ 155 ], "Although": [ 156 ], "rates": [ 159 ], "fluctuated": [ 160 ], "throughout": [ 161 ], "Cenozoic,": [ 163 ], "find": [ 165 ], "no": [ 166 ], "link": [ 167 ], "between": [ 168 ], "Cenozoic": [ 175 ], "temperature,": [ 177 ], "our": [ 179 ], "increases": [ 184 ], "observe": [ 190 ], "disconnected": [ 192 ], "colonization": [ 195 ], "new": [ 197 ], "continents.": [ 198 ], "Taken": [ 199 ], "together,": [ 200 ], "results": [ 202 ], "more": [ 204 ], "complex": [ 205 ], "mechanisms": [ 206 ], "than": [ 207 ], "temperature": [ 208 ], "change": [ 209 ], "or": [ 210 ], "ecological": [ 211 ], "opportunity": [ 212 ], "have": [ 213 ], "controlled": [ 214 ], "macroscale": [ 215 ], "patterns": [ 216 ], "speciation.": [ 219 ] }, "apc_list": null, "apc_paid": null, "authorships": [ { "author_position": "first", "author": { "id": "https://openalex.org/A5039053463", "display_name": "Carl H. 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Field", "raw_affiliation_strings": [ "Department of Biology & Biochemistry, Milner Centre for Evolution, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom;", "Department of Earth Sciences, University of Cambridge, Cambridge CB2 3EQ, United Kingdom;" ], "affiliations": [ { "raw_affiliation_string": "Department of Biology & Biochemistry, Milner Centre for Evolution, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom;", "institution_ids": [ "https://openalex.org/I51601045" ] }, { "raw_affiliation_string": "Department of Earth Sciences, University of Cambridge, Cambridge CB2 3EQ, United Kingdom;", "institution_ids": [ "https://openalex.org/I241749" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5039677353", "display_name": "Daniel T. 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Keith Barker", "raw_affiliation_strings": [ "Bell Museum of Natural History, University of Minnesota, Saint Paul, MN 55108;", "Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN 55108;" ], "affiliations": [ { "raw_affiliation_string": "Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN 55108;", "institution_ids": [ "https://openalex.org/I130238516" ] }, { "raw_affiliation_string": "Bell Museum of Natural History, University of Minnesota, Saint Paul, MN 55108;", "institution_ids": [ "https://openalex.org/I1285182086" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5052609445", "display_name": "Alexandre Luis Padovan Aleixo", "orcid": "https://orcid.org/0000-0002-7816-9725" }, "institutions": [ { "id": "https://openalex.org/I1321642675", "display_name": "Museu Paraense Em\u00edlio Goeldi", "ror": "https://ror.org/010gvqg61", "country_code": "BR", "type": "archive", "lineage": [ "https://openalex.org/I1321642675" ] } ], "countries": [ "BR" ], "is_corresponding": false, "raw_author_name": "Alexandre Aleixo", "raw_affiliation_strings": [ "Department of Zoology, Museu Paraense Em\u00edlio Goeldi, S\u00e3o Braz, 66040170 Bel\u00e9m, PA, Brazil;" ], "affiliations": [ { "raw_affiliation_string": "Department of Zoology, Museu Paraense Em\u00edlio Goeldi, S\u00e3o Braz, 66040170 Bel\u00e9m, PA, Brazil;", "institution_ids": [ "https://openalex.org/I1321642675" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5052851911", "display_name": "Michael J. 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Benz", "orcid": null }, "institutions": [ { "id": "https://openalex.org/I1338124936", "display_name": "American Museum of Natural History", "ror": "https://ror.org/03thb3e06", "country_code": "US", "type": "archive", "lineage": [ "https://openalex.org/I1338124936" ] }, { "id": "https://openalex.org/I27837315", "display_name": "University of Michigan\u2013Ann Arbor", "ror": "https://ror.org/00jmfr291", "country_code": "US", "type": "education", "lineage": [ "https://openalex.org/I27837315" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Brett W. Benz", "raw_affiliation_strings": [ "Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109;", "Division of Vertebrate Zoology, Department of Ornithology, American Museum of Natural History, New York, NY 10024;", "Museum of Zoology, University of Michigan, Ann Arbor, MI 48109;" ], "affiliations": [ { "raw_affiliation_string": "Division of Vertebrate Zoology, Department of Ornithology, American Museum of Natural History, New York, NY 10024;", "institution_ids": [ "https://openalex.org/I1338124936" ] }, { "raw_affiliation_string": "Museum of Zoology, University of Michigan, Ann Arbor, MI 48109;", "institution_ids": [ "https://openalex.org/I27837315" ] }, { "raw_affiliation_string": "Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109;", "institution_ids": [] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5087747590", "display_name": "Edward L. 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