Item talk:Q253553
From geokb
{
"USGS Publications Warehouse": {
"@context": "https://schema.org",
"@type": "Article",
"additionalType": "Journal Article",
"name": "Capture of environmental DNA (eDNA) from water samples by flocculation",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "70211652",
"url": "https://pubs.usgs.gov/publication/70211652"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 70211652
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.3791/60967",
"url": "https://doi.org/10.3791/60967"
}
],
"journal": {
"@type": "Periodical",
"name": "JOVE Journal Of Visualized Experiments",
"volumeNumber": "159",
"issueNumber": null
},
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "JOVE Journal Of Visualized Experiments"
}
],
"datePublished": "2020",
"dateModified": "2020-08-06",
"abstract": "The analysis of environmental DNA (eDNA) has become a widely used approach to problem solving in species management. The detection of cryptic species including invasive and (or) species at risk is the goal, typically accomplished by testing water and sediment for the presence of characteristic DNA signatures. Reliable and efficient procedures for the capture of eDNA are required, especially those that can be performed easily in the field by personnel with limited training and citizen scientists. The capture of eDNA using membrane filtration is widely used currently. This approach has inherent issues that include the choice of filter material and porosity, filter fouling, and time required on site for the process to be performed. Flocculation offers an alternative that can be easily implemented and applied to sampling regimes that strive to cover broad territories in limited time.",
"description": "e60967",
"publisher": {
"@type": "Organization",
"name": "JOVE"
},
"author": [
{
"@type": "Person",
"name": "Schill, W. Bane",
"givenName": "W. Bane",
"familyName": "Schill",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-9217-984X",
"url": "https://orcid.org/0000-0002-9217-984X"
},
"affiliation": [
{
"@type": "Organization",
"name": "Leetown Science Center",
"url": "https://www.usgs.gov/centers/eesc"
}
]
}
],
"funder": [
{
"@type": "Organization",
"name": "Leetown Science Center",
"url": "https://www.usgs.gov/centers/eesc"
}
]
},
"OpenAlex": {
"abstract_inverted_index": {
"The": [
0,
18,
76
],
"analysis": [
1
],
"of": [
2,
20,
43,
54,
78,
96
],
"environmental": [
3
],
"DNA": [
4,
45
],
"(eDNA)": [
5
],
"has": [
6,
89
],
"become": [
7
],
"a": [
8
],
"widely": [
9,
84
],
"used": [
10,
85
],
"approach": [
11,
88
],
"to": [
12,
111,
125,
130
],
"problem": [
13
],
"solving": [
14
],
"in": [
15,
65,
134
],
"species": [
16,
22,
27
],
"management.": [
17
],
"detection": [
19
],
"cryptic": [
21
],
"including": [
23
],
"invasive": [
24
],
"and": [
25,
38,
48,
73,
99,
103,
123
],
"(or)": [
26
],
"at": [
28
],
"risk": [
29
],
"is": [
30,
83
],
"the": [
31,
41,
52,
66,
94,
109
],
"goal,": [
32
],
"typically": [
33
],
"accomplished": [
34
],
"by": [
35,
68
],
"testing": [
36
],
"water": [
37
],
"sediment": [
39
],
"for": [
40,
51,
108
],
"presence": [
42
],
"characteristic": [
44
],
"signatures.": [
46
],
"Reliable": [
47
],
"efficient": [
49
],
"procedures": [
50
],
"capture": [
53,
77
],
"eDNA": [
55,
79
],
"are": [
56
],
"required,": [
57
],
"especially": [
58
],
"those": [
59
],
"that": [
60,
92,
118,
128
],
"can": [
61,
119
],
"be": [
62,
112,
120
],
"performed": [
63
],
"easily": [
64,
121
],
"field": [
67
],
"personnel": [
69
],
"with": [
70
],
"limited": [
71,
135
],
"training": [
72
],
"citizen": [
74
],
"scientists.": [
75
],
"using": [
80
],
"membrane": [
81
],
"filtration": [
82
],
"currently.": [
86
],
"This": [
87
],
"inherent": [
90
],
"issues": [
91
],
"include": [
93
],
"choice": [
95
],
"filter": [
97,
101
],
"material": [
98
],
"porosity,": [
100
],
"fouling,": [
102
],
"time": [
104
],
"required": [
105
],
"on": [
106
],
"site": [
107
],
"process": [
110
],
"performed.": [
113
],
"Flocculation": [
114
],
"offers": [
115
],
"an": [
116
],
"alternative": [
117
],
"implemented": [
122
],
"applied": [
124
],
"sampling": [
126
],
"regimes": [
127
],
"strive": [
129
],
"cover": [
131
],
"broad": [
132
],
"territories": [
133
],
"time.": [
136
]
},
"apc_list": null,
"apc_paid": null,
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5071420472",
"display_name": "William B. Schill",
"orcid": "https://orcid.org/0000-0002-9217-984X"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": true,
"raw_author_name": "William B. Schill",
"raw_affiliation_strings": [
"Leetown Science Center, U.S. Geological Survey"
],
"affiliations": [
{
"raw_affiliation_string": "Leetown Science Center, U.S. Geological Survey",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
}
],
"best_oa_location": null,
"biblio": {
"volume": null,
"issue": "159",
"first_page": null,
"last_page": null
},
"citation_normalized_percentile": {
"value": 0.405813,
"is_in_top_1_percent": false,
"is_in_top_10_percent": false
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W3032151346",
"cited_by_count": 1,
"cited_by_percentile_year": {
"min": 63,
"max": 71
},
"concepts": [
{
"id": "https://openalex.org/C2779969263",
"wikidata": "https://www.wikidata.org/wiki/Q25098939",
"display_name": "Environmental DNA",
"level": 3,
"score": 0.89746463
},
{
"id": "https://openalex.org/C128489963",
"wikidata": "https://www.wikidata.org/wiki/Q1187724",
"display_name": "Filtration (mathematics)",
"level": 2,
"score": 0.6646173
},
{
"id": "https://openalex.org/C148815931",
"wikidata": "https://www.wikidata.org/wiki/Q900689",
"display_name": "Flocculation",
"level": 2,
"score": 0.64848936
},
{
"id": "https://openalex.org/C140779682",
"wikidata": "https://www.wikidata.org/wiki/Q210868",
"display_name": "Sampling (signal processing)",
"level": 3,
"score": 0.60706025
},
{
"id": "https://openalex.org/C106131492",
"wikidata": "https://www.wikidata.org/wiki/Q3072260",
"display_name": "Filter (signal processing)",
"level": 2,
"score": 0.51120925
},
{
"id": "https://openalex.org/C39432304",
"wikidata": "https://www.wikidata.org/wiki/Q188847",
"display_name": "Environmental science",
"level": 0,
"score": 0.50264
},
{
"id": "https://openalex.org/C183696295",
"wikidata": "https://www.wikidata.org/wiki/Q2487696",
"display_name": "Biochemical engineering",
"level": 1,
"score": 0.37815854
},
{
"id": "https://openalex.org/C41008148",
"wikidata": "https://www.wikidata.org/wiki/Q21198",
"display_name": "Computer science",
"level": 0,
"score": 0.35641515
},
{
"id": "https://openalex.org/C86803240",
"wikidata": "https://www.wikidata.org/wiki/Q420",
"display_name": "Biology",
"level": 0,
"score": 0.30497238
},
{
"id": "https://openalex.org/C18903297",
"wikidata": "https://www.wikidata.org/wiki/Q7150",
"display_name": "Ecology",
"level": 1,
"score": 0.26517206
},
{
"id": "https://openalex.org/C87717796",
"wikidata": "https://www.wikidata.org/wiki/Q146326",
"display_name": "Environmental engineering",
"level": 1,
"score": 0.24463183
},
{
"id": "https://openalex.org/C127413603",
"wikidata": "https://www.wikidata.org/wiki/Q11023",
"display_name": "Engineering",
"level": 0,
"score": 0.19210145
},
{
"id": "https://openalex.org/C130217890",
"wikidata": "https://www.wikidata.org/wiki/Q47041",
"display_name": "Biodiversity",
"level": 2,
"score": 0.12487379
},
{
"id": "https://openalex.org/C33923547",
"wikidata": "https://www.wikidata.org/wiki/Q395",
"display_name": "Mathematics",
"level": 0,
"score": 0.10334772
},
{
"id": "https://openalex.org/C31972630",
"wikidata": "https://www.wikidata.org/wiki/Q844240",
"display_name": "Computer vision",
"level": 1,
"score": 0.07816827
},
{
"id": "https://openalex.org/C105795698",
"wikidata": "https://www.wikidata.org/wiki/Q12483",
"display_name": "Statistics",
"level": 1,
"score": 0.0
}
],
"corresponding_author_ids": [
"https://openalex.org/A5071420472"
],
"corresponding_institution_ids": [
"https://openalex.org/I1286329397"
],
"countries_distinct_count": 1,
"counts_by_year": [
{
"year": 2022,
"cited_by_count": 1
}
],
"created_date": "2020-06-05",
"datasets": [],
"display_name": "Capture of Environmental DNA (eDNA) from Water Samples by Flocculation",
"doi": "https://doi.org/10.3791/60967",
"fwci": 0.12,
"grants": [],
"has_fulltext": false,
"id": "https://openalex.org/W3032151346",
"ids": {
"openalex": "https://openalex.org/W3032151346",
"doi": "https://doi.org/10.3791/60967",
"mag": "3032151346",
"pmid": "https://pubmed.ncbi.nlm.nih.gov/32538918"
},
"indexed_in": [
"crossref",
"pubmed"
],
"institutions_distinct_count": 1,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/filtration",
"display_name": "Filtration (mathematics)",
"score": 0.6646173
},
{
"id": "https://openalex.org/keywords/environmental-dna",
"display_name": "Environmental DNA",
"score": 0.637843
},
{
"id": "https://openalex.org/keywords/dna-barcoding",
"display_name": "DNA Barcoding",
"score": 0.518293
},
{
"id": "https://openalex.org/keywords/molecular-ecology",
"display_name": "Molecular Ecology",
"score": 0.513309
}
],
"language": "en",
"locations": [
{
"is_oa": false,
"landing_page_url": "https://doi.org/10.3791/60967",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S199738284",
"display_name": "Journal of Visualized Experiments",
"issn_l": "1940-087X",
"issn": [
"1940-087X"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310320416",
"host_organization_name": "MyJOVE",
"host_organization_lineage": [
"https://openalex.org/P4310320416"
],
"host_organization_lineage_names": [
"MyJOVE"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
},
{
"is_oa": false,
"landing_page_url": "https://pubmed.ncbi.nlm.nih.gov/32538918",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4306525036",
"display_name": "PubMed",
"issn_l": null,
"issn": null,
"is_oa": false,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1299303238",
"host_organization_name": "National Institutes of Health",
"host_organization_lineage": [
"https://openalex.org/I1299303238"
],
"host_organization_lineage_names": [
"National Institutes of Health"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
}
],
"locations_count": 2,
"mesh": [
{
"descriptor_ui": "D000080309",
"descriptor_name": "DNA, Environmental",
"qualifier_ui": "Q000737",
"qualifier_name": "chemistry",
"is_major_topic": true
},
{
"descriptor_ui": "D004784",
"descriptor_name": "Environmental Monitoring",
"qualifier_ui": "Q000379",
"qualifier_name": "methods",
"is_major_topic": true
},
{
"descriptor_ui": "D005427",
"descriptor_name": "Flocculation",
"qualifier_ui": "Q000187",
"qualifier_name": "drug effects",
"is_major_topic": true
},
{
"descriptor_ui": "D000818",
"descriptor_name": "Animals",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D000080309",
"descriptor_name": "DNA, Environmental",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D004784",
"descriptor_name": "Environmental Monitoring",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D005427",
"descriptor_name": "Flocculation",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D014426",
"descriptor_name": "Turtles",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
}
],
"ngrams_url": "https://api.openalex.org/works/W3032151346/ngrams",
"open_access": {
"is_oa": false,
"oa_status": "closed",
"oa_url": null,
"any_repository_has_fulltext": false
},
"primary_location": {
"is_oa": false,
"landing_page_url": "https://doi.org/10.3791/60967",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S199738284",
"display_name": "Journal of Visualized Experiments",
"issn_l": "1940-087X",
"issn": [
"1940-087X"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310320416",
"host_organization_name": "MyJOVE",
"host_organization_lineage": [
"https://openalex.org/P4310320416"
],
"host_organization_lineage_names": [
"MyJOVE"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
},
"primary_topic": {
"id": "https://openalex.org/T12640",
"display_name": "Environmental DNA in Biodiversity Monitoring",
"score": 0.9999,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
"publication_date": "2020-05-29",
"publication_year": 2020,
"referenced_works": [],
"referenced_works_count": 0,
"related_works": [
"https://openalex.org/W2766330439",
"https://openalex.org/W2442109081",
"https://openalex.org/W2392843399",
"https://openalex.org/W2388244690",
"https://openalex.org/W2366954216",
"https://openalex.org/W2362361002",
"https://openalex.org/W2354629095",
"https://openalex.org/W2354485965",
"https://openalex.org/W2351896033",
"https://openalex.org/W2090404612"
],
"sustainable_development_goals": [
{
"display_name": "Life on land",
"id": "https://metadata.un.org/sdg/15",
"score": 0.59
}
],
"title": "Capture of Environmental DNA (eDNA) from Water Samples by Flocculation",
"topics": [
{
"id": "https://openalex.org/T12640",
"display_name": "Environmental DNA in Biodiversity Monitoring",
"score": 0.9999,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
{
"id": "https://openalex.org/T12388",
"display_name": "DNA Barcoding for Food Authentication and Fraud Detection",
"score": 0.9179,
"subfield": {
"id": "https://openalex.org/subfields/1312",
"display_name": "Molecular Biology"
},
"field": {
"id": "https://openalex.org/fields/13",
"display_name": "Biochemistry, Genetics and Molecular Biology"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
},
{
"id": "https://openalex.org/T12034",
"display_name": "Digital Forensics Research and Challenges",
"score": 0.9059,
"subfield": {
"id": "https://openalex.org/subfields/1710",
"display_name": "Information Systems"
},
"field": {
"id": "https://openalex.org/fields/17",
"display_name": "Computer Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-15T16:00:05.419078",
"versions": []
}
}
