Item talk:Q253542
From geokb
{
"USGS Publications Warehouse": {
"@context": "https://schema.org",
"@type": "Article",
"additionalType": "Journal Article",
"name": "High-throughput sequencing reveals distinct regional genetic structure among remaining populations of an endangered salt marsh plant in California",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "70209829",
"url": "https://pubs.usgs.gov/publication/70209829"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 70209829
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.1007/s10592-020-01269-3",
"url": "https://doi.org/10.1007/s10592-020-01269-3"
}
],
"journal": {
"@type": "Periodical",
"name": "Conservation Genetics",
"volumeNumber": "21",
"issueNumber": null
},
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "Conservation Genetics"
}
],
"datePublished": "2020",
"dateModified": "2020-06-04",
"abstract": "Conservation of rare species requires careful consideration to both preserve locally adapted traits and maintain genetic diversity, as species\u2019 ranges fluctuate in response to a changing climate and habitat loss. Salt marsh systems in California have been highly modified and many salt marsh obligate species have undergone range reductions and habitat loss with concomitant losses of genetic diversity and connectivity. Remaining salt marshes are threatened by rising sea levels, and so these habitats will likely require active restoration and re-establishment efforts. This study aims to provide a reference point for the current status of genetic diversity and range-wide population structure of a federally and state listed endangered plant, Salt Marsh Bird\u2019s Beak (Chloropyron maritimum subsp. maritimum) that can inform future preservation and restoration efforts. We used historical data and current monitoring information to locate and sample all known occurrences throughout the species range in Southern California, and three additional occurrences from Baja California, Mexico. We used flow cytometry and single nucleotide polymorphic markers (SNPs), generated by double-digest restriction-site associated DNA sequencing (ddRAD), to assess relative ploidy, and estimate genetic diversity and population structure across the region. Overall, we found four to five distinct genetic clusters that coincide with geographic regions. Genetic diversity was greatest in the southern part of the range including Baja California and San Diego. These findings can bolster management and restoration efforts by identifying potentially isolated occurrences and areas that are rich sources of allelic diversity, and by providing insight into the amount of genetic differentiation across the species range.",
"description": "13 p.",
"publisher": {
"@type": "Organization",
"name": "Springer"
},
"author": [
{
"@type": "Person",
"name": "Milano, Elizabeth R.",
"givenName": "Elizabeth R.",
"familyName": "Milano",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0003-4143-9303",
"url": "https://orcid.org/0000-0003-4143-9303"
},
"affiliation": [
{
"@type": "Organization",
"name": "Western Ecological Research Center",
"url": "https://www.usgs.gov/centers/werc"
}
]
},
{
"@type": "Person",
"name": "Mulligan, Margaret R",
"givenName": "Margaret R",
"familyName": "Mulligan",
"affiliation": [
{
"@type": "Organization",
"name": "San Diego Natural History Museum, San Diego, CA"
}
]
},
{
"@type": "Person",
"name": "Rebman, Jon P.",
"givenName": "Jon P.",
"familyName": "Rebman",
"affiliation": [
{
"@type": "Organization",
"name": "San Diego Natural History Museum"
}
]
},
{
"@type": "Person",
"name": "Vandergast, Amy G. avandergast@usgs.gov",
"givenName": "Amy G.",
"familyName": "Vandergast",
"email": "avandergast@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-7835-6571",
"url": "https://orcid.org/0000-0002-7835-6571"
},
"affiliation": [
{
"@type": "Organization",
"name": "Western Ecological Research Center",
"url": "https://www.usgs.gov/centers/werc"
}
]
}
],
"funder": [
{
"@type": "Organization",
"name": "Western Ecological Research Center",
"url": "https://www.usgs.gov/centers/werc"
}
],
"spatialCoverage": [
{
"@type": "Place",
"additionalType": "country",
"name": "United States",
"url": "https://geonames.org/4074035"
},
{
"@type": "Place",
"additionalType": "state",
"name": "California"
},
{
"@type": "Place",
"geo": [
{
"@type": "GeoShape",
"additionalProperty": {
"@type": "PropertyValue",
"name": "GeoJSON",
"value": {
"type": "FeatureCollection",
"features": [
{
"type": "Feature",
"properties": {},
"geometry": {
"type": "Polygon",
"coordinates": [
[
[
-121.201171875,
32.65787573695528
],
[
-116.103515625,
32.65787573695528
],
[
-116.103515625,
35.460669951495305
],
[
-121.201171875,
35.460669951495305
],
[
-121.201171875,
32.65787573695528
]
]
]
}
}
]
}
}
},
{
"@type": "GeoCoordinates",
"latitude": 34.0592728442253,
"longitude": -118.65234375
}
]
}
]
},
"OpenAlex": {
"abstract_inverted_index": null,
"apc_list": {
"value": 2690,
"currency": "EUR",
"value_usd": 3390,
"provenance": "doaj"
},
"apc_paid": null,
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5055026747",
"display_name": "Elizabeth R. Milano",
"orcid": "https://orcid.org/0000-0003-4143-9303"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Elizabeth R. Milano",
"raw_affiliation_strings": [
"U.S. Geological Survey, Western Ecological Research Center, San Diego Field Station, 4165 Spruance Rd. Suite 200, San Diego, CA, 92101, USA"
],
"affiliations": [
{
"raw_affiliation_string": "U.S. Geological Survey, Western Ecological Research Center, San Diego Field Station, 4165 Spruance Rd. Suite 200, San Diego, CA, 92101, USA",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5086465578",
"display_name": "Margaret R. Mulligan",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I2801277401",
"display_name": "San Diego Natural History Museum",
"ror": "https://ror.org/00kmpab62",
"country_code": "US",
"type": "archive",
"lineage": [
"https://openalex.org/I2801277401"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Margaret R. Mulligan",
"raw_affiliation_strings": [
"Department of Botany, San Diego Natural History Museum, 1788 El Prado, San Diego, CA, 92101, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Department of Botany, San Diego Natural History Museum, 1788 El Prado, San Diego, CA, 92101, USA",
"institution_ids": [
"https://openalex.org/I2801277401"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5050058942",
"display_name": "Jon P. Rebman",
"orcid": "https://orcid.org/0000-0002-4150-7356"
},
"institutions": [
{
"id": "https://openalex.org/I2801277401",
"display_name": "San Diego Natural History Museum",
"ror": "https://ror.org/00kmpab62",
"country_code": "US",
"type": "archive",
"lineage": [
"https://openalex.org/I2801277401"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Jon P. Rebman",
"raw_affiliation_strings": [
"Department of Botany, San Diego Natural History Museum, 1788 El Prado, San Diego, CA, 92101, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Department of Botany, San Diego Natural History Museum, 1788 El Prado, San Diego, CA, 92101, USA",
"institution_ids": [
"https://openalex.org/I2801277401"
]
}
]
},
{
"author_position": "last",
"author": {
"id": "https://openalex.org/A5049634384",
"display_name": "Amy G. Vandergast",
"orcid": "https://orcid.org/0000-0002-7835-6571"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Amy G. Vandergast",
"raw_affiliation_strings": [
"U.S. Geological Survey, Western Ecological Research Center, San Diego Field Station, 4165 Spruance Rd. Suite 200, San Diego, CA, 92101, USA"
],
"affiliations": [
{
"raw_affiliation_string": "U.S. Geological Survey, Western Ecological Research Center, San Diego Field Station, 4165 Spruance Rd. Suite 200, San Diego, CA, 92101, USA",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
}
],
"best_oa_location": null,
"biblio": {
"volume": "21",
"issue": "3",
"first_page": "547",
"last_page": "559"
},
"citation_normalized_percentile": {
"value": 0.652907,
"is_in_top_1_percent": false,
"is_in_top_10_percent": false
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W3014418887",
"cited_by_count": 8,
"cited_by_percentile_year": {
"min": 85,
"max": 87
},
"concepts": [
{
"id": "https://openalex.org/C24518262",
"wikidata": "https://www.wikidata.org/wiki/Q16197023",
"display_name": "Threatened species",
"level": 3,
"score": 0.7455625
},
{
"id": "https://openalex.org/C81977670",
"wikidata": "https://www.wikidata.org/wiki/Q585259",
"display_name": "Genetic diversity",
"level": 3,
"score": 0.7330971
},
{
"id": "https://openalex.org/C86803240",
"wikidata": "https://www.wikidata.org/wiki/Q420",
"display_name": "Biology",
"level": 0,
"score": 0.71352696
},
{
"id": "https://openalex.org/C87441765",
"wikidata": "https://www.wikidata.org/wiki/Q29925",
"display_name": "Salt marsh",
"level": 2,
"score": 0.67331016
},
{
"id": "https://openalex.org/C179345059",
"wikidata": "https://www.wikidata.org/wiki/Q11394",
"display_name": "Endangered species",
"level": 3,
"score": 0.6132974
},
{
"id": "https://openalex.org/C18903297",
"wikidata": "https://www.wikidata.org/wiki/Q7150",
"display_name": "Ecology",
"level": 1,
"score": 0.59976125
},
{
"id": "https://openalex.org/C130217890",
"wikidata": "https://www.wikidata.org/wiki/Q47041",
"display_name": "Biodiversity",
"level": 2,
"score": 0.54085803
},
{
"id": "https://openalex.org/C204323151",
"wikidata": "https://www.wikidata.org/wiki/Q905424",
"display_name": "Range (aeronautics)",
"level": 2,
"score": 0.5245062
},
{
"id": "https://openalex.org/C2908647359",
"wikidata": "https://www.wikidata.org/wiki/Q2625603",
"display_name": "Population",
"level": 2,
"score": 0.50898576
},
{
"id": "https://openalex.org/C51213014",
"wikidata": "https://www.wikidata.org/wiki/Q4390843",
"display_name": "Conservation genetics",
"level": 5,
"score": 0.47018185
},
{
"id": "https://openalex.org/C185933670",
"wikidata": "https://www.wikidata.org/wiki/Q52105",
"display_name": "Habitat",
"level": 2,
"score": 0.45166045
},
{
"id": "https://openalex.org/C61320498",
"wikidata": "https://www.wikidata.org/wiki/Q265193",
"display_name": "Microsatellite",
"level": 4,
"score": 0.10453981
},
{
"id": "https://openalex.org/C180754005",
"wikidata": "https://www.wikidata.org/wiki/Q80726",
"display_name": "Allele",
"level": 3,
"score": 0.081522316
},
{
"id": "https://openalex.org/C104317684",
"wikidata": "https://www.wikidata.org/wiki/Q7187",
"display_name": "Gene",
"level": 2,
"score": 0.0
},
{
"id": "https://openalex.org/C55493867",
"wikidata": "https://www.wikidata.org/wiki/Q7094",
"display_name": "Biochemistry",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C192562407",
"wikidata": "https://www.wikidata.org/wiki/Q228736",
"display_name": "Materials science",
"level": 0,
"score": 0.0
},
{
"id": "https://openalex.org/C149923435",
"wikidata": "https://www.wikidata.org/wiki/Q37732",
"display_name": "Demography",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C144024400",
"wikidata": "https://www.wikidata.org/wiki/Q21201",
"display_name": "Sociology",
"level": 0,
"score": 0.0
},
{
"id": "https://openalex.org/C159985019",
"wikidata": "https://www.wikidata.org/wiki/Q181790",
"display_name": "Composite material",
"level": 1,
"score": 0.0
}
],
"corresponding_author_ids": [],
"corresponding_institution_ids": [],
"countries_distinct_count": 1,
"counts_by_year": [
{
"year": 2023,
"cited_by_count": 3
},
{
"year": 2022,
"cited_by_count": 3
},
{
"year": 2021,
"cited_by_count": 2
}
],
"created_date": "2020-04-10",
"datasets": [],
"display_name": "High-throughput sequencing reveals distinct regional genetic structure among remaining populations of an endangered salt marsh plant in California",
"doi": "https://doi.org/10.1007/s10592-020-01269-3",
"fwci": 0.963,
"grants": [],
"has_fulltext": false,
"id": "https://openalex.org/W3014418887",
"ids": {
"openalex": "https://openalex.org/W3014418887",
"doi": "https://doi.org/10.1007/s10592-020-01269-3",
"mag": "3014418887"
},
"indexed_in": [
"crossref"
],
"institutions_distinct_count": 2,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/salt-marsh",
"display_name": "Salt marsh",
"score": 0.67331016
},
{
"id": "https://openalex.org/keywords/species-delimitation",
"display_name": "Species Delimitation",
"score": 0.515609
},
{
"id": "https://openalex.org/keywords/conservation-genetics",
"display_name": "Conservation genetics",
"score": 0.47018185
}
],
"language": "en",
"locations": [
{
"is_oa": false,
"landing_page_url": "https://doi.org/10.1007/s10592-020-01269-3",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S176933442",
"display_name": "Conservation Genetics",
"issn_l": "1566-0621",
"issn": [
"1566-0621",
"1572-9737"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310319900",
"host_organization_name": "Springer Science+Business Media",
"host_organization_lineage": [
"https://openalex.org/P4310319965",
"https://openalex.org/P4310319900"
],
"host_organization_lineage_names": [
"Springer Nature",
"Springer Science+Business Media"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
}
],
"locations_count": 1,
"mesh": [],
"ngrams_url": "https://api.openalex.org/works/W3014418887/ngrams",
"open_access": {
"is_oa": false,
"oa_status": "closed",
"oa_url": null,
"any_repository_has_fulltext": false
},
"primary_location": {
"is_oa": false,
"landing_page_url": "https://doi.org/10.1007/s10592-020-01269-3",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S176933442",
"display_name": "Conservation Genetics",
"issn_l": "1566-0621",
"issn": [
"1566-0621",
"1572-9737"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310319900",
"host_organization_name": "Springer Science+Business Media",
"host_organization_lineage": [
"https://openalex.org/P4310319965",
"https://openalex.org/P4310319900"
],
"host_organization_lineage_names": [
"Springer Nature",
"Springer Science+Business Media"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
},
"primary_topic": {
"id": "https://openalex.org/T10779",
"display_name": "Importance of Mangrove Ecosystems in Coastal Protection",
"score": 0.9995,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
"publication_date": "2020-03-30",
"publication_year": 2020,
"referenced_works": [
"https://openalex.org/W1048267848",
"https://openalex.org/W1545604506",
"https://openalex.org/W1854916829",
"https://openalex.org/W1919772617",
"https://openalex.org/W1968423560",
"https://openalex.org/W1970939676",
"https://openalex.org/W1971212249",
"https://openalex.org/W1977528696",
"https://openalex.org/W1980934312",
"https://openalex.org/W2011336580",
"https://openalex.org/W2017254525",
"https://openalex.org/W2035164312",
"https://openalex.org/W2042770634",
"https://openalex.org/W2048092228",
"https://openalex.org/W2051808407",
"https://openalex.org/W2056299665",
"https://openalex.org/W2058987334",
"https://openalex.org/W2066362596",
"https://openalex.org/W2080040748",
"https://openalex.org/W2080873675",
"https://openalex.org/W2083494857",
"https://openalex.org/W2093923729",
"https://openalex.org/W2097833259",
"https://openalex.org/W2098126593",
"https://openalex.org/W2099708131",
"https://openalex.org/W2104301422",
"https://openalex.org/W2106746675",
"https://openalex.org/W2108524369",
"https://openalex.org/W2113291597",
"https://openalex.org/W2113401798",
"https://openalex.org/W2120405557",
"https://openalex.org/W2120741237",
"https://openalex.org/W2126798394",
"https://openalex.org/W2127397691",
"https://openalex.org/W2138092548",
"https://openalex.org/W2138315818",
"https://openalex.org/W2138710139",
"https://openalex.org/W2142398490",
"https://openalex.org/W2146290595",
"https://openalex.org/W2147237747",
"https://openalex.org/W2147952304",
"https://openalex.org/W2161184021",
"https://openalex.org/W2161339576",
"https://openalex.org/W2161615807",
"https://openalex.org/W2161901637",
"https://openalex.org/W2171463101",
"https://openalex.org/W2174944929",
"https://openalex.org/W2181225530",
"https://openalex.org/W2193115384",
"https://openalex.org/W2201096141",
"https://openalex.org/W2340403968",
"https://openalex.org/W2466535924",
"https://openalex.org/W2512261022",
"https://openalex.org/W2525758217",
"https://openalex.org/W2600760682",
"https://openalex.org/W2610484156",
"https://openalex.org/W2759910691",
"https://openalex.org/W2790271205",
"https://openalex.org/W2790934709",
"https://openalex.org/W2802864323",
"https://openalex.org/W2888350625",
"https://openalex.org/W2914994398",
"https://openalex.org/W2950223396",
"https://openalex.org/W4285719527",
"https://openalex.org/W4299498251"
],
"referenced_works_count": 65,
"related_works": [
"https://openalex.org/W4226305413",
"https://openalex.org/W4200062561",
"https://openalex.org/W3099160008",
"https://openalex.org/W3082259634",
"https://openalex.org/W2991709920",
"https://openalex.org/W2948202437",
"https://openalex.org/W2901677690",
"https://openalex.org/W2378857408",
"https://openalex.org/W2218507553",
"https://openalex.org/W2185925447"
],
"sustainable_development_goals": [],
"title": "High-throughput sequencing reveals distinct regional genetic structure among remaining populations of an endangered salt marsh plant in California",
"topics": [
{
"id": "https://openalex.org/T10779",
"display_name": "Importance of Mangrove Ecosystems in Coastal Protection",
"score": 0.9995,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
{
"id": "https://openalex.org/T10643",
"display_name": "Ecological Dynamics of Marine Environments",
"score": 0.9927,
"subfield": {
"id": "https://openalex.org/subfields/1910",
"display_name": "Oceanography"
},
"field": {
"id": "https://openalex.org/fields/19",
"display_name": "Earth and Planetary Sciences"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
{
"id": "https://openalex.org/T10012",
"display_name": "Population Genetic Structure and Dynamics",
"score": 0.9627,
"subfield": {
"id": "https://openalex.org/subfields/1311",
"display_name": "Genetics"
},
"field": {
"id": "https://openalex.org/fields/13",
"display_name": "Biochemistry, Genetics and Molecular Biology"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-12T17:36:41.903767",
"versions": []
}
}
