Item talk:Q249310
From geokb
{
"USGS Publications Warehouse": {
"@context": "https://schema.org",
"@type": "Article",
"additionalType": "Journal Article",
"name": "Phylogenetic classification of the frog pathogen Amphibiothecum (Dermosporidium) penneri based on small ribosomal subunit sequencing",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "1003786",
"url": "https://pubs.usgs.gov/publication/1003786"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 1003786
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.7589/0090-3558-41.4.701",
"url": "https://doi.org/10.7589/0090-3558-41.4.701"
}
],
"journal": {
"@type": "Periodical",
"name": "Journal of Wildlife Diseases",
"volumeNumber": "41",
"issueNumber": "4"
},
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "Journal of Wildlife Diseases"
}
],
"datePublished": "2005",
"dateModified": "2022-05-26",
"abstract": "We determined 1,600 base pairs of DNA sequence in the 18S small ribosomal subunit from two geographically distinct isolates of\u00a0Dermosporidium penneri. Maximum likelihood and parsimony analysis of these sequences place\u00a0D. penneri\u00a0in the order Dermocystida of the class Mesomycetozoea. The 18S rRNA sequences from these two isolates only differ within a single region of 16 contiguous nucleotides. Based on the distant phylogenetic relationship of these organisms to\u00a0Amphibiocystidium ranae\u00a0and similarity to\u00a0Sphaerothecum destruens\u00a0we propose the organism be renamed\u00a0Amphibiothecum penneri.",
"description": "6 p.",
"publisher": {
"@type": "Organization",
"name": "Wildlife Disease Association"
},
"author": [
{
"@type": "Person",
"name": "Green, D. Earl david_green@usgs.gov",
"givenName": "D. Earl",
"familyName": "Green",
"email": "david_green@usgs.gov"
},
{
"@type": "Person",
"name": "Wimsatt, Jeffrey",
"givenName": "Jeffrey",
"familyName": "Wimsatt"
},
{
"@type": "Person",
"name": "Feldman, S. H.",
"givenName": "S. H.",
"familyName": "Feldman"
}
],
"funder": [
{
"@type": "Organization",
"name": "National Wildlife Health Center",
"url": "https://www.usgs.gov/centers/nwhc"
}
]
},
"OpenAlex": {
"abstract_inverted_index": {
"We": [
0
],
"determined": [
1
],
"1,600": [
2
],
"base": [
3
],
"pairs": [
4
],
"of": [
5,
19,
27,
37,
55,
65
],
"DNA": [
6
],
"sequence": [
7
],
"in": [
8,
33
],
"the": [
9,
34,
38,
61,
78
],
"18S": [
10,
42
],
"small": [
11
],
"ribosomal": [
12
],
"subunit": [
13
],
"from": [
14,
45
],
"two": [
15,
47
],
"geographically": [
16
],
"distinct": [
17
],
"isolates": [
18,
48
],
"Dermosporidium": [
20
],
"penneri.": [
21,
83
],
"Maximum": [
22
],
"likelihood": [
23
],
"and": [
24,
71
],
"parsimony": [
25
],
"analysis": [
26
],
"these": [
28,
46,
66
],
"sequences": [
29,
44
],
"place": [
30
],
"D.": [
31
],
"penneri": [
32
],
"order": [
35
],
"Dermocystida": [
36
],
"class": [
39
],
"Mesomycetozoea.": [
40
],
"The": [
41
],
"rRNA": [
43
],
"only": [
49
],
"differ": [
50
],
"within": [
51
],
"a": [
52
],
"single": [
53
],
"region": [
54
],
"16": [
56
],
"contiguous": [
57
],
"nucleotides.": [
58
],
"Based": [
59
],
"on": [
60
],
"distant": [
62
],
"phylogenetic": [
63
],
"relationship": [
64
],
"organisms": [
67
],
"to": [
68,
73
],
"Amphibiocystidium": [
69
],
"ranae": [
70
],
"similarity": [
72
],
"Sphaerothecum": [
74
],
"destruens": [
75
],
"we": [
76
],
"propose": [
77
],
"organism": [
79
],
"be": [
80
],
"renamed": [
81
],
"Amphibiothecum": [
82
]
},
"apc_list": null,
"apc_paid": null,
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5072869637",
"display_name": "Sanford H. Feldman",
"orcid": "https://orcid.org/0000-0001-8041-8690"
},
"institutions": [
{
"id": "https://openalex.org/I51556381",
"display_name": "University of Virginia",
"ror": "https://ror.org/0153tk833",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I51556381"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Sanford H. Feldman",
"raw_affiliation_strings": [
"Center for Comparative Medicine, University of Virginia, Charlottesville, Virginia 22908, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Comparative Medicine, University of Virginia, Charlottesville, Virginia 22908, USA",
"institution_ids": [
"https://openalex.org/I51556381"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5063718775",
"display_name": "Jeffrey Wimsatt",
"orcid": "https://orcid.org/0000-0002-7818-2479"
},
"institutions": [
{
"id": "https://openalex.org/I51556381",
"display_name": "University of Virginia",
"ror": "https://ror.org/0153tk833",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I51556381"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Jeffrey H. Wimsatt",
"raw_affiliation_strings": [
"Center for Comparative Medicine, University of Virginia, Charlottesville, Virginia 22908, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Comparative Medicine, University of Virginia, Charlottesville, Virginia 22908, USA",
"institution_ids": [
"https://openalex.org/I51556381"
]
}
]
},
{
"author_position": "last",
"author": {
"id": "https://openalex.org/A5001647415",
"display_name": "D. Earl Green",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I4210131920",
"display_name": "National Wildlife Health Center",
"ror": "https://ror.org/038d10y34",
"country_code": "US",
"type": "healthcare",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249",
"https://openalex.org/I4210131920"
]
},
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "D. Earl Green",
"raw_affiliation_strings": [
"National Wildlife Health Center, United States Geological Survey, Madison, Wisconsin 53711, USA"
],
"affiliations": [
{
"raw_affiliation_string": "National Wildlife Health Center, United States Geological Survey, Madison, Wisconsin 53711, USA",
"institution_ids": [
"https://openalex.org/I4210131920",
"https://openalex.org/I1286329397"
]
}
]
}
],
"best_oa_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.7589/0090-3558-41.4.701",
"pdf_url": "https://meridian.allenpress.com/jwd/article-pdf/41/4/701/2333854/0090-3558-41_4_701.pdf",
"source": {
"id": "https://openalex.org/S113896437",
"display_name": "Journal of Wildlife Diseases",
"issn_l": "0090-3558",
"issn": [
"0090-3558",
"1943-3700"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4322697125",
"host_organization_name": "Wildlife Disease Association",
"host_organization_lineage": [
"https://openalex.org/P4322697125"
],
"host_organization_lineage_names": [
"Wildlife Disease Association"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"biblio": {
"volume": "41",
"issue": "4",
"first_page": "701",
"last_page": "706"
},
"citation_normalized_percentile": {
"value": 0.809891,
"is_in_top_1_percent": false,
"is_in_top_10_percent": false
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W2159063717",
"cited_by_count": 23,
"cited_by_percentile_year": {
"min": 88,
"max": 89
},
"concepts": [
{
"id": "https://openalex.org/C86803240",
"wikidata": "https://www.wikidata.org/wiki/Q420",
"display_name": "Biology",
"level": 0,
"score": 0.8725234
},
{
"id": "https://openalex.org/C193252679",
"wikidata": "https://www.wikidata.org/wiki/Q242125",
"display_name": "Phylogenetic tree",
"level": 3,
"score": 0.7534119
},
{
"id": "https://openalex.org/C67905577",
"wikidata": "https://www.wikidata.org/wiki/Q215980",
"display_name": "Ribosomal RNA",
"level": 3,
"score": 0.6001085
},
{
"id": "https://openalex.org/C207812311",
"wikidata": "https://www.wikidata.org/wiki/Q426560",
"display_name": "Ribosomal DNA",
"level": 4,
"score": 0.55611753
},
{
"id": "https://openalex.org/C22799545",
"wikidata": "https://www.wikidata.org/wiki/Q1805805",
"display_name": "Maximum parsimony",
"level": 5,
"score": 0.43964374
},
{
"id": "https://openalex.org/C54355233",
"wikidata": "https://www.wikidata.org/wiki/Q7162",
"display_name": "Genetics",
"level": 1,
"score": 0.41759732
},
{
"id": "https://openalex.org/C104317684",
"wikidata": "https://www.wikidata.org/wiki/Q7187",
"display_name": "Gene",
"level": 2,
"score": 0.15606546
},
{
"id": "https://openalex.org/C44465124",
"wikidata": "https://www.wikidata.org/wiki/Q713623",
"display_name": "Clade",
"level": 4,
"score": 0.06897405
}
],
"corresponding_author_ids": [],
"corresponding_institution_ids": [],
"countries_distinct_count": 1,
"counts_by_year": [
{
"year": 2021,
"cited_by_count": 2
},
{
"year": 2020,
"cited_by_count": 2
},
{
"year": 2019,
"cited_by_count": 3
},
{
"year": 2018,
"cited_by_count": 1
},
{
"year": 2017,
"cited_by_count": 1
},
{
"year": 2016,
"cited_by_count": 2
},
{
"year": 2015,
"cited_by_count": 2
},
{
"year": 2014,
"cited_by_count": 1
},
{
"year": 2013,
"cited_by_count": 3
},
{
"year": 2012,
"cited_by_count": 1
}
],
"created_date": "2016-06-24",
"datasets": [],
"display_name": "PHYLOGENETIC CLASSIFICATION OF THE FROG PATHOGEN AMPHIBIOTHECUM (DERMOSPORIDIUM) PENNERI BASED ON SMALL RIBOSOMAL SUBUNIT SEQUENCING",
"doi": "https://doi.org/10.7589/0090-3558-41.4.701",
"fwci": 0.916,
"grants": [],
"has_fulltext": false,
"id": "https://openalex.org/W2159063717",
"ids": {
"openalex": "https://openalex.org/W2159063717",
"doi": "https://doi.org/10.7589/0090-3558-41.4.701",
"mag": "2159063717",
"pmid": "https://pubmed.ncbi.nlm.nih.gov/16456158"
},
"indexed_in": [
"crossref",
"pubmed"
],
"institutions_distinct_count": 3,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/pathogen-diversity",
"display_name": "Pathogen Diversity",
"score": 0.467718
},
{
"id": "https://openalex.org/keywords/maximum-parsimony",
"display_name": "Maximum parsimony",
"score": 0.43964374
}
],
"language": "en",
"locations": [
{
"is_oa": true,
"landing_page_url": "https://doi.org/10.7589/0090-3558-41.4.701",
"pdf_url": "https://meridian.allenpress.com/jwd/article-pdf/41/4/701/2333854/0090-3558-41_4_701.pdf",
"source": {
"id": "https://openalex.org/S113896437",
"display_name": "Journal of Wildlife Diseases",
"issn_l": "0090-3558",
"issn": [
"0090-3558",
"1943-3700"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4322697125",
"host_organization_name": "Wildlife Disease Association",
"host_organization_lineage": [
"https://openalex.org/P4322697125"
],
"host_organization_lineage_names": [
"Wildlife Disease Association"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": true,
"landing_page_url": "http://www.bioone.org/doi/10.7589/0090-3558-41.4.701",
"pdf_url": "https://bioone.org/journals/journal-of-wildlife-diseases/volume-41/issue-4/0090-3558-41.4.701/PHYLOGENETIC-CLASSIFICATION-OF-THE-FROG-PATHOGEN-AMPHIBIOTHECUM-DERMOSPORIDIUM-PENNERI-BASED/10.7589/0090-3558-41.4.701.pdf",
"source": {
"id": "https://openalex.org/S4306402358",
"display_name": "BioOne Complete (BioOne)",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I4210111627",
"host_organization_name": "BioOne",
"host_organization_lineage": [
"https://openalex.org/I4210111627"
],
"host_organization_lineage_names": [
"BioOne"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": "submittedVersion",
"is_accepted": false,
"is_published": false
},
{
"is_oa": false,
"landing_page_url": "https://pubmed.ncbi.nlm.nih.gov/16456158",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4306525036",
"display_name": "PubMed",
"issn_l": null,
"issn": null,
"is_oa": false,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1299303238",
"host_organization_name": "National Institutes of Health",
"host_organization_lineage": [
"https://openalex.org/I1299303238"
],
"host_organization_lineage_names": [
"National Institutes of Health"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
}
],
"locations_count": 3,
"mesh": [
{
"descriptor_ui": "D050298",
"descriptor_name": "Mesomycetozoea",
"qualifier_ui": "Q000145",
"qualifier_name": "classification",
"is_major_topic": true
},
{
"descriptor_ui": "D050738",
"descriptor_name": "Mesomycetozoea Infections",
"qualifier_ui": "Q000469",
"qualifier_name": "parasitology",
"is_major_topic": true
},
{
"descriptor_ui": "D011898",
"descriptor_name": "Ranidae",
"qualifier_ui": "Q000469",
"qualifier_name": "parasitology",
"is_major_topic": true
},
{
"descriptor_ui": "D000818",
"descriptor_name": "Animals",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D001483",
"descriptor_name": "Base Sequence",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D004275",
"descriptor_name": "DNA, Ribosomal",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D004275",
"descriptor_name": "DNA, Ribosomal",
"qualifier_ui": "Q000032",
"qualifier_name": "analysis",
"is_major_topic": false
},
{
"descriptor_ui": "D016013",
"descriptor_name": "Likelihood Functions",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D050298",
"descriptor_name": "Mesomycetozoea",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D050738",
"descriptor_name": "Mesomycetozoea Infections",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D008969",
"descriptor_name": "Molecular Sequence Data",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D010802",
"descriptor_name": "Phylogeny",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D012337",
"descriptor_name": "RNA, Ribosomal, 18S",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D012337",
"descriptor_name": "RNA, Ribosomal, 18S",
"qualifier_ui": "Q000032",
"qualifier_name": "analysis",
"is_major_topic": false
},
{
"descriptor_ui": "D012337",
"descriptor_name": "RNA, Ribosomal, 18S",
"qualifier_ui": "Q000235",
"qualifier_name": "genetics",
"is_major_topic": false
},
{
"descriptor_ui": "D011898",
"descriptor_name": "Ranidae",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D017422",
"descriptor_name": "Sequence Analysis, DNA",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D017422",
"descriptor_name": "Sequence Analysis, DNA",
"qualifier_ui": "Q000662",
"qualifier_name": "veterinary",
"is_major_topic": false
}
],
"ngrams_url": "https://api.openalex.org/works/W2159063717/ngrams",
"open_access": {
"is_oa": true,
"oa_status": "bronze",
"oa_url": "https://meridian.allenpress.com/jwd/article-pdf/41/4/701/2333854/0090-3558-41_4_701.pdf",
"any_repository_has_fulltext": true
},
"primary_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.7589/0090-3558-41.4.701",
"pdf_url": "https://meridian.allenpress.com/jwd/article-pdf/41/4/701/2333854/0090-3558-41_4_701.pdf",
"source": {
"id": "https://openalex.org/S113896437",
"display_name": "Journal of Wildlife Diseases",
"issn_l": "0090-3558",
"issn": [
"0090-3558",
"1943-3700"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4322697125",
"host_organization_name": "Wildlife Disease Association",
"host_organization_lineage": [
"https://openalex.org/P4322697125"
],
"host_organization_lineage_names": [
"Wildlife Disease Association"
],
"type": "journal"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"primary_topic": {
"id": "https://openalex.org/T13385",
"display_name": "Emerging Animal Pathogens and Diseases",
"score": 1.0,
"subfield": {
"id": "https://openalex.org/subfields/3404",
"display_name": "Small Animals"
},
"field": {
"id": "https://openalex.org/fields/34",
"display_name": "Veterinary"
},
"domain": {
"id": "https://openalex.org/domains/4",
"display_name": "Health Sciences"
}
},
"publication_date": "2005-10-01",
"publication_year": 2005,
"referenced_works": [
"https://openalex.org/W1589704179",
"https://openalex.org/W1947611227",
"https://openalex.org/W1966659481",
"https://openalex.org/W1979596764",
"https://openalex.org/W2000576731",
"https://openalex.org/W2008363718",
"https://openalex.org/W2034733986",
"https://openalex.org/W2039198993",
"https://openalex.org/W2073592483",
"https://openalex.org/W2100640909",
"https://openalex.org/W2101743666",
"https://openalex.org/W2105448596",
"https://openalex.org/W2123226470",
"https://openalex.org/W2143563067",
"https://openalex.org/W2145528962",
"https://openalex.org/W2150297520",
"https://openalex.org/W2291705348",
"https://openalex.org/W2325635291",
"https://openalex.org/W3199943451"
],
"referenced_works_count": 19,
"related_works": [
"https://openalex.org/W3161267193",
"https://openalex.org/W3073579923",
"https://openalex.org/W2572809090",
"https://openalex.org/W2289384747",
"https://openalex.org/W2084739049",
"https://openalex.org/W2076061307",
"https://openalex.org/W2051662717",
"https://openalex.org/W2022672552",
"https://openalex.org/W2002948976",
"https://openalex.org/W1820048409"
],
"sustainable_development_goals": [
{
"display_name": "Life on land",
"score": 0.44,
"id": "https://metadata.un.org/sdg/15"
},
{
"display_name": "Life below water",
"score": 0.43,
"id": "https://metadata.un.org/sdg/14"
}
],
"title": "PHYLOGENETIC CLASSIFICATION OF THE FROG PATHOGEN AMPHIBIOTHECUM (DERMOSPORIDIUM) PENNERI BASED ON SMALL RIBOSOMAL SUBUNIT SEQUENCING",
"topics": [
{
"id": "https://openalex.org/T13385",
"display_name": "Emerging Animal Pathogens and Diseases",
"score": 1.0,
"subfield": {
"id": "https://openalex.org/subfields/3404",
"display_name": "Small Animals"
},
"field": {
"id": "https://openalex.org/fields/34",
"display_name": "Veterinary"
},
"domain": {
"id": "https://openalex.org/domains/4",
"display_name": "Health Sciences"
}
},
{
"id": "https://openalex.org/T10825",
"display_name": "Diversity and Evolution of Fungal Pathogens",
"score": 0.9951,
"subfield": {
"id": "https://openalex.org/subfields/1307",
"display_name": "Cell Biology"
},
"field": {
"id": "https://openalex.org/fields/13",
"display_name": "Biochemistry, Genetics and Molecular Biology"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
},
{
"id": "https://openalex.org/T10451",
"display_name": "Mycorrhizal Fungi and Plant Interactions",
"score": 0.989,
"subfield": {
"id": "https://openalex.org/subfields/1110",
"display_name": "Plant Science"
},
"field": {
"id": "https://openalex.org/fields/11",
"display_name": "Agricultural and Biological Sciences"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-15T13:32:20.216571",
"versions": []
}
}
