Item talk:Q242870
From geokb
{
"USGS Publications Warehouse": { "@context": "https://schema.org", "@type": "Article", "additionalType": "Journal Article", "name": "Development and characterization of 21 polymorphic microsatellite markers for the barren-ground shrew, Sorex ugyunak (Mammalia: Sorcidae), through next-generation sequencing, and cross-species amplification in the masked shrew, S. cinereus", "identifier": [ { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse IndexID", "value": "70044616", "url": "https://pubs.usgs.gov/publication/70044616" }, { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse Internal ID", "value": 70044616 }, { "@type": "PropertyValue", "propertyID": "DOI", "value": "10.1007/s12686-012-9792-5", "url": "https://doi.org/10.1007/s12686-012-9792-5" } ], "journal": { "@type": "Periodical", "name": "Conservation Genetics Resources", "volumeNumber": "5", "issueNumber": "2" }, "inLanguage": "en", "isPartOf": [ { "@type": "CreativeWorkSeries", "name": "Conservation Genetics Resources" } ], "datePublished": "2013", "dateModified": "2018-08-20", "abstract": "We used next generation shotgun sequencing to develop 21 novel microsatellite markers for the barren-ground shrew (Sorex ugyunak), which were polymorphic among individuals from northern Alaska. The loci displayed moderate allelic diversity (averaging 6.81 alleles per locus) and heterozygosity (averaging 70\u00a0%). Two loci deviated from Hardy\u2013Weinberg equilibrium (HWE) due to heterozygote deficiency. While the population did not deviate from HWE overall, it showed significant linkage disequilibrium suggesting this population is not in mutation-drift equilibrium. Nineteen of 21 loci were polymorphic in masked shrews (S. cinereus) from interior Alaska and exhibited linkage equilibrium and HWE overall. All loci yielded sufficient variability for use in population studies.", "description": "4 p.", "publisher": { "@type": "Organization", "name": "Springer" }, "author": [ { "@type": "Person", "name": "Sage, G. Kevin ksage@usgs.gov", "givenName": "G. Kevin", "familyName": "Sage", "email": "ksage@usgs.gov", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0003-1431-2286", "url": "https://orcid.org/0000-0003-1431-2286" }, "affiliation": [ { "@type": "Organization", "name": "Alaska Science Center Biology WTEB", "url": "https://www.usgs.gov/centers/alaska-science-center" } ] }, { "@type": "Person", "name": "Talbot, Sandra L. stalbot@usgs.gov", "givenName": "Sandra L.", "familyName": "Talbot", "email": "stalbot@usgs.gov", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0002-3312-7214", "url": "https://orcid.org/0000-0002-3312-7214" }, "affiliation": [ { "@type": "Organization", "name": "Alaska Science Center", "url": "https://www.usgs.gov/centers/alaska-science-center" }, { "@type": "Organization", "name": "Alaska Science Center Biology WTEB", "url": "https://www.usgs.gov/centers/alaska-science-center" } ] }, { "@type": "Person", "name": "Hope, Andrew G. ahope@usgs.gov", "givenName": "Andrew G.", "familyName": "Hope", "email": "ahope@usgs.gov", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0003-3814-2891", "url": "https://orcid.org/0000-0003-3814-2891" }, "affiliation": [ { "@type": "Organization", "name": "Alaska Science Center Biology WTEB", "url": "https://www.usgs.gov/centers/alaska-science-center" } ] }, { "@type": "Person", "name": "Sonsthagen, Sarah A. ssonsthagen@usgs.gov", "givenName": "Sarah A.", "familyName": "Sonsthagen", "email": "ssonsthagen@usgs.gov", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0001-6215-5874", "url": "https://orcid.org/0000-0001-6215-5874" }, "affiliation": [ { "@type": "Organization", "name": "Alaska Science Center", "url": "https://www.usgs.gov/centers/alaska-science-center" }, { "@type": "Organization", "name": "Alaska Science Center Biology WTEB", "url": "https://www.usgs.gov/centers/alaska-science-center" } ] }, { "@type": "Person", "name": "Cook, J.A.", "givenName": "J.A.", "familyName": "Cook" }, { "@type": "Person", "name": "Fowler, Megan C. mfowler@usgs.gov", "givenName": "Megan C.", "familyName": "Fowler", "email": "mfowler@usgs.gov", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0002-4947-0236", "url": "https://orcid.org/0000-0002-4947-0236" }, "affiliation": [ { "@type": "Organization", "name": "Alaska Science Center Biology WTEB" } ] } ], "funder": [ { "@type": "Organization", "name": "Alaska Science Center Biology", "url": "https://www.usgs.gov/centers/alaska-science-center" } ] }, "OpenAlex": { "abstract_inverted_index": null, "apc_list": { "value": 2490, "currency": "EUR", "value_usd": 3290, "provenance": "doaj" }, "apc_paid": null, "authorships": [ { "author_position": "first", "author": { "id": "https://openalex.org/A5036189994", "display_name": "Sarah A. Sonsthagen", "orcid": "https://orcid.org/0000-0001-6215-5874" }, "institutions": [ { "id": "https://openalex.org/I1286329397", "display_name": "United States Geological Survey", "ror": "https://ror.org/035a68863", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "S. A. Sonsthagen", "raw_affiliation_strings": [ "US Geological Survey Alaska Science Center, Anchorage, USA" ], "affiliations": [ { "raw_affiliation_string": "US Geological Survey Alaska Science Center, Anchorage, USA", "institution_ids": [ "https://openalex.org/I1286329397" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5079094719", "display_name": "George K. Sage", "orcid": "https://orcid.org/0000-0003-1431-2286" }, "institutions": [ { "id": "https://openalex.org/I1286329397", "display_name": "United States Geological Survey", "ror": "https://ror.org/035a68863", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "G. K. Sage", "raw_affiliation_strings": [ "US Geological Survey Alaska Science Center, Anchorage, USA" ], "affiliations": [ { "raw_affiliation_string": "US Geological Survey Alaska Science Center, Anchorage, USA", "institution_ids": [ "https://openalex.org/I1286329397" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5019788112", "display_name": "Martin R Fowler", "orcid": null }, "institutions": [ { "id": "https://openalex.org/I1286329397", "display_name": "United States Geological Survey", "ror": "https://ror.org/035a68863", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "M. Fowler", "raw_affiliation_strings": [ "US Geological Survey Alaska Science Center, Anchorage, USA" ], "affiliations": [ { "raw_affiliation_string": "US Geological Survey Alaska Science Center, Anchorage, USA", "institution_ids": [ "https://openalex.org/I1286329397" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5033611402", "display_name": "Andrew G. Hope", "orcid": "https://orcid.org/0000-0003-3814-2891" }, "institutions": [ { "id": "https://openalex.org/I1286329397", "display_name": "United States Geological Survey", "ror": "https://ror.org/035a68863", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "A. G. Hope", "raw_affiliation_strings": [ "US Geological Survey Alaska Science Center, Anchorage, USA" ], "affiliations": [ { "raw_affiliation_string": "US Geological Survey Alaska Science Center, Anchorage, USA", "institution_ids": [ "https://openalex.org/I1286329397" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5006136799", "display_name": "Joseph A. Cook", "orcid": "https://orcid.org/0000-0003-3985-0670" }, "institutions": [ { "id": "https://openalex.org/I169521973", "display_name": "University of New Mexico", "ror": "https://ror.org/05fs6jp91", "country_code": "US", "type": "education", "lineage": [ "https://openalex.org/I169521973" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "J. A. Cook", "raw_affiliation_strings": [ "Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, USA" ], "affiliations": [ { "raw_affiliation_string": "Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, USA", "institution_ids": [ "https://openalex.org/I169521973" ] } ] }, { "author_position": "last", "author": { "id": "https://openalex.org/A5034440183", "display_name": "Sandra L. Talbot", "orcid": "https://orcid.org/0000-0002-3312-7214" }, "institutions": [ { "id": "https://openalex.org/I1286329397", "display_name": "United States Geological Survey", "ror": "https://ror.org/035a68863", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "S. L. Talbot", "raw_affiliation_strings": [ "US Geological Survey Alaska Science Center, Anchorage, USA" ], "affiliations": [ { "raw_affiliation_string": "US Geological Survey Alaska Science Center, Anchorage, USA", "institution_ids": [ "https://openalex.org/I1286329397" ] } ] } ], "best_oa_location": null, "biblio": { "volume": "5", "issue": "2", "first_page": "315", "last_page": "318" }, "citation_normalized_percentile": { "value": 0.711013, "is_in_top_1_percent": false, "is_in_top_10_percent": false }, "cited_by_api_url": "https://api.openalex.org/works?filter=cites:W1984084340", "cited_by_count": 4, "cited_by_percentile_year": { "min": 78, "max": 80 }, "concepts": [ { "id": "https://openalex.org/C2777755905", "wikidata": "https://www.wikidata.org/wiki/Q41631", "display_name": "Shrew", "level": 2, "score": 0.84652066 }, { "id": "https://openalex.org/C86803240", "wikidata": "https://www.wikidata.org/wiki/Q420", "display_name": "Biology", "level": 0, "score": 0.82725775 }, { "id": "https://openalex.org/C61320498", "wikidata": "https://www.wikidata.org/wiki/Q265193", "display_name": "Microsatellite", "level": 4, "score": 0.77469075 }, { "id": "https://openalex.org/C35605836", "wikidata": "https://www.wikidata.org/wiki/Q2064311", "display_name": "Linkage disequilibrium", "level": 5, "score": 0.7313099 }, { "id": "https://openalex.org/C84597430", "wikidata": "https://www.wikidata.org/wiki/Q106227", "display_name": "Locus (genetics)", "level": 3, "score": 0.6641243 }, { "id": "https://openalex.org/C54355233", "wikidata": "https://www.wikidata.org/wiki/Q7162", "display_name": "Genetics", "level": 1, "score": 0.6616202 }, { "id": "https://openalex.org/C143589142", "wikidata": "https://www.wikidata.org/wiki/Q2617554", "display_name": "Loss of heterozygosity", "level": 4, "score": 0.60550225 }, { "id": "https://openalex.org/C2908647359", "wikidata": "https://www.wikidata.org/wiki/Q2625603", "display_name": "Population", "level": 2, "score": 0.5642035 }, { "id": "https://openalex.org/C2776350779", "wikidata": "https://www.wikidata.org/wiki/Q5607349", "display_name": "Sorex", "level": 2, "score": 0.46530113 }, { "id": "https://openalex.org/C180754005", "wikidata": "https://www.wikidata.org/wiki/Q80726", "display_name": "Allele", "level": 3, "score": 0.46165 }, { "id": "https://openalex.org/C78458016", "wikidata": "https://www.wikidata.org/wiki/Q840400", "display_name": "Evolutionary biology", "level": 1, "score": 0.37988263 }, { "id": "https://openalex.org/C90856448", "wikidata": "https://www.wikidata.org/wiki/Q431", "display_name": "Zoology", "level": 1, "score": 0.32178938 }, { "id": "https://openalex.org/C197754878", "wikidata": "https://www.wikidata.org/wiki/Q80711", "display_name": "Haplotype", "level": 4, "score": 0.12554651 }, { "id": "https://openalex.org/C104317684", "wikidata": "https://www.wikidata.org/wiki/Q7187", "display_name": "Gene", "level": 2, "score": 0.08485505 }, { "id": "https://openalex.org/C149923435", "wikidata": "https://www.wikidata.org/wiki/Q37732", "display_name": "Demography", "level": 1, "score": 0.05022177 }, { "id": "https://openalex.org/C144024400", "wikidata": "https://www.wikidata.org/wiki/Q21201", "display_name": "Sociology", "level": 0, "score": 0.0 } ], "corresponding_author_ids": [], "corresponding_institution_ids": [], "countries_distinct_count": 1, "counts_by_year": [ { "year": 2023, "cited_by_count": 1 }, { "year": 2019, "cited_by_count": 1 }, { "year": 2018, "cited_by_count": 1 }, { "year": 2017, "cited_by_count": 1 } ], "created_date": "2016-06-24", "datasets": [], "display_name": "Development and characterization of 21 polymorphic microsatellite markers for the barren-ground shrew, Sorex ugyunak (Mammalia: Sorcidae), through next-generation sequencing, and cross-species amplification in the masked shrew, S. cinereus", "doi": "https://doi.org/10.1007/s12686-012-9792-5", "fulltext_origin": "ngrams", "fwci": 0.0, "grants": [], "has_fulltext": true, "id": "https://openalex.org/W1984084340", "ids": { "openalex": "https://openalex.org/W1984084340", "doi": "https://doi.org/10.1007/s12686-012-9792-5", "mag": "1984084340" }, "indexed_in": [ "crossref" ], "institutions_distinct_count": 2, "is_paratext": false, "is_retracted": false, "keywords": [ { "id": "https://openalex.org/keywords/shrew", "display_name": "Shrew", "score": 0.84652066 }, { "id": "https://openalex.org/keywords/linkage-disequilibrium", "display_name": "Linkage disequilibrium", "score": 0.7313099 }, { "id": "https://openalex.org/keywords/marker-assisted-selection", "display_name": "Marker-Assisted Selection", "score": 0.511049 }, { "id": "https://openalex.org/keywords/sorex", "display_name": "Sorex", "score": 0.46530113 } ], "language": "en", "locations": [ { "is_oa": false, "landing_page_url": "https://doi.org/10.1007/s12686-012-9792-5", "pdf_url": null, "source": { "id": "https://openalex.org/S147353869", "display_name": "Conservation Genetics Resources", "issn_l": "1877-7252", "issn": [ "1877-7252", "1877-7260" ], "is_oa": false, "is_in_doaj": false, "is_core": true, "host_organization": "https://openalex.org/P4310319900", "host_organization_name": "Springer Science+Business Media", "host_organization_lineage": [ "https://openalex.org/P4310319965", "https://openalex.org/P4310319900" ], "host_organization_lineage_names": [ "Springer Nature", "Springer Science+Business Media" ], "type": "journal" }, "license": null, "license_id": null, "version": null, "is_accepted": false, "is_published": false } ], "locations_count": 1, "mesh": [], "ngrams_url": "https://api.openalex.org/works/W1984084340/ngrams", "open_access": { "is_oa": false, "oa_status": "closed", "oa_url": null, "any_repository_has_fulltext": false }, "primary_location": { "is_oa": false, "landing_page_url": "https://doi.org/10.1007/s12686-012-9792-5", "pdf_url": null, "source": { "id": "https://openalex.org/S147353869", "display_name": "Conservation Genetics Resources", "issn_l": "1877-7252", "issn": [ "1877-7252", "1877-7260" ], "is_oa": false, "is_in_doaj": false, "is_core": true, "host_organization": "https://openalex.org/P4310319900", "host_organization_name": "Springer Science+Business Media", "host_organization_lineage": [ "https://openalex.org/P4310319965", "https://openalex.org/P4310319900" ], "host_organization_lineage_names": [ "Springer Nature", "Springer Science+Business Media" ], "type": "journal" }, "license": null, "license_id": null, "version": null, "is_accepted": false, "is_published": false }, "primary_topic": { "id": "https://openalex.org/T11228", "display_name": "Ecology and Behavior of Bats", "score": 0.9965, "subfield": { "id": "https://openalex.org/subfields/1105", "display_name": "Ecology, Evolution, Behavior and Systematics" }, "field": { "id": "https://openalex.org/fields/11", "display_name": "Agricultural and Biological Sciences" }, "domain": { "id": "https://openalex.org/domains/1", "display_name": "Life Sciences" } }, "publication_date": "2012-10-10", "publication_year": 2012, "referenced_works": [ "https://openalex.org/W1968842231", "https://openalex.org/W1970593709", "https://openalex.org/W2003271323", "https://openalex.org/W2034754212", "https://openalex.org/W2059147403", "https://openalex.org/W2078152050", "https://openalex.org/W2106353408", "https://openalex.org/W2128925014", "https://openalex.org/W2144924760", "https://openalex.org/W2162193831", "https://openalex.org/W2163504043", "https://openalex.org/W2180232018", "https://openalex.org/W2253414912", "https://openalex.org/W3203084722", "https://openalex.org/W4302535496", "https://openalex.org/W659378956" ], "referenced_works_count": 16, "related_works": [ "https://openalex.org/W4385841710", "https://openalex.org/W4312563998", "https://openalex.org/W3173811053", "https://openalex.org/W3173497057", "https://openalex.org/W2331843258", "https://openalex.org/W2321121676", "https://openalex.org/W2129877684", "https://openalex.org/W2030060871", "https://openalex.org/W2021833978", "https://openalex.org/W1990340945" ], "sustainable_development_goals": [ { "score": 0.82, "id": "https://metadata.un.org/sdg/14", "display_name": "Life below water" } ], "title": "Development and characterization of 21 polymorphic microsatellite markers for the barren-ground shrew, Sorex ugyunak (Mammalia: Sorcidae), through next-generation sequencing, and cross-species amplification in the masked shrew, S. cinereus", "topics": [ { "id": "https://openalex.org/T11228", "display_name": "Ecology and Behavior of Bats", "score": 0.9965, "subfield": { "id": "https://openalex.org/subfields/1105", "display_name": "Ecology, Evolution, Behavior and Systematics" }, "field": { "id": "https://openalex.org/fields/11", "display_name": "Agricultural and Biological Sciences" }, "domain": { "id": "https://openalex.org/domains/1", "display_name": "Life Sciences" } }, { "id": "https://openalex.org/T10012", "display_name": "Population Genetic Structure and Dynamics", "score": 0.9835, "subfield": { "id": "https://openalex.org/subfields/1311", "display_name": "Genetics" }, "field": { "id": "https://openalex.org/fields/13", "display_name": "Biochemistry, Genetics and Molecular Biology" }, "domain": { "id": "https://openalex.org/domains/1", "display_name": "Life Sciences" } }, { "id": "https://openalex.org/T11468", "display_name": "Genetic Architecture of Quantitative Traits", "score": 0.9833, "subfield": { "id": "https://openalex.org/subfields/1311", "display_name": "Genetics" }, "field": { "id": "https://openalex.org/fields/13", "display_name": "Biochemistry, Genetics and Molecular Biology" }, "domain": { "id": "https://openalex.org/domains/1", "display_name": "Life Sciences" } } ], "type": "article", "type_crossref": "journal-article", "updated_date": "2024-08-15T04:31:08.168318", "versions": [] }
}