Item talk:Q242594

From geokb

{

 "USGS Publications Warehouse": {
   "@context": "https://schema.org",
   "@type": "Article",
   "additionalType": "Journal Article",
   "name": "Adjusting survival estimates for premature transmitter failure: A case study from the Sacramento-San Joaquin Delta",
   "identifier": [
     {
       "@type": "PropertyValue",
       "propertyID": "USGS Publications Warehouse IndexID",
       "value": "70043969",
       "url": "https://pubs.usgs.gov/publication/70043969"
     },
     {
       "@type": "PropertyValue",
       "propertyID": "USGS Publications Warehouse Internal ID",
       "value": 70043969
     },
     {
       "@type": "PropertyValue",
       "propertyID": "DOI",
       "value": "10.1007/s10641-012-0016-3",
       "url": "https://doi.org/10.1007/s10641-012-0016-3"
     }
   ],
   "journal": {
     "@type": "Periodical",
     "name": "Environmental Biology of Fishes",
     "volumeNumber": "96",
     "issueNumber": "2"
   },
   "inLanguage": "en",
   "isPartOf": [
     {
       "@type": "CreativeWorkSeries",
       "name": "Environmental Biology of Fishes"
     }
   ],
   "datePublished": "2013",
   "dateModified": "2016-05-04",
   "abstract": "In telemetry studies, premature tag failure causes negative bias in fish survival estimates because tag failure is interpreted as fish mortality. We used mark-recapture modeling to adjust estimates of fish survival for a previous study where premature tag failure was documented. High rates of tag failure occurred during the Vernalis Adaptive Management Plan\u2019s (VAMP) 2008 study to estimate survival of fall-run Chinook salmon (Oncorhynchus tshawytscha) during migration through the San Joaquin River and Sacramento-San Joaquin Delta, California. Due to a high rate of tag failure, the observed travel time distribution was likely negatively biased, resulting in an underestimate of tag survival probability in this study. Consequently, the bias-adjustment method resulted in only a small increase in estimated fish survival when the observed travel time distribution was used to estimate the probability of tag survival. Since the bias-adjustment failed to remove bias, we used historical travel time data and conducted a sensitivity analysis to examine how fish survival might have varied across a range of tag survival probabilities. Our analysis suggested that fish survival estimates were low (95% confidence bounds range from 0.052 to 0.227) over a wide range of plausible tag survival probabilities (0.48\u20131.00), and this finding is consistent with other studies in this system. When tags fail at a high rate, available methods to adjust for the bias may perform poorly. Our example highlights the importance of evaluating the tag life assumption during survival studies, and presents a simple framework for evaluating adjusted survival estimates when auxiliary travel time data are available.",
   "description": "9 p.",
   "publisher": {
     "@type": "Organization",
     "name": "Kluwer Academic Publishers"
   },
   "author": [
     {
       "@type": "Person",
       "name": "Perry, Russell W. rperry@usgs.gov",
       "givenName": "Russell W.",
       "familyName": "Perry",
       "email": "rperry@usgs.gov",
       "identifier": {
         "@type": "PropertyValue",
         "propertyID": "ORCID",
         "value": "0000-0003-4110-8619",
         "url": "https://orcid.org/0000-0003-4110-8619"
       },
       "affiliation": [
         {
           "@type": "Organization",
           "name": "Western Fisheries Research Center",
           "url": "https://www.usgs.gov/centers/western-fisheries-research-center"
         }
       ]
     },
     {
       "@type": "Person",
       "name": "Adams, Noah S. nadams@usgs.gov",
       "givenName": "Noah S.",
       "familyName": "Adams",
       "email": "nadams@usgs.gov",
       "identifier": {
         "@type": "PropertyValue",
         "propertyID": "ORCID",
         "value": "0000-0002-8354-0293",
         "url": "https://orcid.org/0000-0002-8354-0293"
       },
       "affiliation": [
         {
           "@type": "Organization",
           "name": "Western Fisheries Research Center",
           "url": "https://www.usgs.gov/centers/western-fisheries-research-center"
         }
       ]
     },
     {
       "@type": "Person",
       "name": "Holbrook, Christopher M. cholbrook@usgs.gov",
       "givenName": "Christopher M.",
       "familyName": "Holbrook",
       "email": "cholbrook@usgs.gov",
       "identifier": {
         "@type": "PropertyValue",
         "propertyID": "ORCID",
         "value": "0000-0001-8203-6856",
         "url": "https://orcid.org/0000-0001-8203-6856"
       },
       "affiliation": [
         {
           "@type": "Organization",
           "name": "Great Lakes Science Center",
           "url": "https://www.usgs.gov/centers/great-lakes-science-center"
         }
       ]
     },
     {
       "@type": "Person",
       "name": "Brandes, Patricia L.",
       "givenName": "Patricia L.",
       "familyName": "Brandes"
     }
   ],
   "funder": [
     {
       "@type": "Organization",
       "name": "Western Fisheries Research Center",
       "url": "https://www.usgs.gov/centers/western-fisheries-research-center"
     }
   ],
   "spatialCoverage": [
     {
       "@type": "Place",
       "additionalType": "country",
       "name": "United States",
       "url": "https://geonames.org/4074035"
     },
     {
       "@type": "Place",
       "additionalType": "state",
       "name": "California"
     },
     {
       "@type": "Place",
       "additionalType": "unknown",
       "name": "Sacramento-San Joaquin Delta",
       "url": "https://geonames.org/5389649"
     },
     {
       "@type": "Place",
       "additionalType": "unknown",
       "name": "San Joaquin River",
       "url": "https://geonames.org/5392159"
     },
     {
       "@type": "Place",
       "geo": [
         {
           "@type": "GeoShape",
           "additionalProperty": {
             "@type": "PropertyValue",
             "name": "GeoJSON",
             "value": {
               "type": "FeatureCollection",
               "features": [
                 {
                   "type": "Feature",
                   "properties": {},
                   "geometry": {
                     "type": "Polygon",
                     "coordinates": [
                       [
                         [
                           -121.929093,
                           37.735197
                         ],
                         [
                           -121.929093,
                           38.126074
                         ],
                         [
                           -121.300766,
                           38.126074
                         ],
                         [
                           -121.300766,
                           37.735197
                         ],
                         [
                           -121.929093,
                           37.735197
                         ]
                       ]
                     ]
                   }
                 }
               ]
             }
           }
         },
         {
           "@type": "GeoCoordinates",
           "latitude": 37.9306355,
           "longitude": -121.6149295
         }
       ]
     }
   ]
 },
 "OpenAlex": {
   "abstract_inverted_index": null,
   "apc_list": {
     "value": 2690,
     "currency": "EUR",
     "value_usd": 3390,
     "provenance": "doaj"
   },
   "apc_paid": null,
   "authorships": [
     {
       "author_position": "first",
       "author": {
         "id": "https://openalex.org/A5013174057",
         "display_name": "Christopher M. Holbrook",
         "orcid": "https://orcid.org/0000-0001-8203-6856"
       },
       "institutions": [
         {
           "id": "https://openalex.org/I1286329397",
           "display_name": "United States Geological Survey",
           "ror": "https://ror.org/035a68863",
           "country_code": "US",
           "type": "government",
           "lineage": [
             "https://openalex.org/I1286329397",
             "https://openalex.org/I1335927249"
           ]
         }
       ],
       "countries": [
         "US"
       ],
       "is_corresponding": true,
       "raw_author_name": "Christopher M. Holbrook",
       "raw_affiliation_strings": [
         "U.S. Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA, USA"
       ],
       "affiliations": [
         {
           "raw_affiliation_string": "U.S. Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA, USA",
           "institution_ids": [
             "https://openalex.org/I1286329397"
           ]
         }
       ]
     },
     {
       "author_position": "middle",
       "author": {
         "id": "https://openalex.org/A5085416393",
         "display_name": "Russell W. Perry",
         "orcid": "https://orcid.org/0000-0003-4110-8619"
       },
       "institutions": [
         {
           "id": "https://openalex.org/I1286329397",
           "display_name": "United States Geological Survey",
           "ror": "https://ror.org/035a68863",
           "country_code": "US",
           "type": "government",
           "lineage": [
             "https://openalex.org/I1286329397",
             "https://openalex.org/I1335927249"
           ]
         }
       ],
       "countries": [
         "US"
       ],
       "is_corresponding": false,
       "raw_author_name": "Russell W. Perry",
       "raw_affiliation_strings": [
         "U.S. Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA, USA"
       ],
       "affiliations": [
         {
           "raw_affiliation_string": "U.S. Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA, USA",
           "institution_ids": [
             "https://openalex.org/I1286329397"
           ]
         }
       ]
     },
     {
       "author_position": "middle",
       "author": {
         "id": "https://openalex.org/A5066242844",
         "display_name": "Patricia L. Brandes",
         "orcid": null
       },
       "institutions": [
         {
           "id": "https://openalex.org/I1343028186",
           "display_name": "United States Fish and Wildlife Service",
           "ror": "https://ror.org/04k7dar27",
           "country_code": "US",
           "type": "government",
           "lineage": [
             "https://openalex.org/I1335927249",
             "https://openalex.org/I1343028186"
           ]
         }
       ],
       "countries": [
         "US"
       ],
       "is_corresponding": false,
       "raw_author_name": "Patricia L. Brandes",
       "raw_affiliation_strings": [
         "U.S. Fish and Wildlife Service, Stockton Fishery Resource Office, Stockton, CA, USA"
       ],
       "affiliations": [
         {
           "raw_affiliation_string": "U.S. Fish and Wildlife Service, Stockton Fishery Resource Office, Stockton, CA, USA",
           "institution_ids": [
             "https://openalex.org/I1343028186"
           ]
         }
       ]
     },
     {
       "author_position": "last",
       "author": {
         "id": "https://openalex.org/A5067186151",
         "display_name": "Noah S. Adams",
         "orcid": "https://orcid.org/0000-0002-8354-0293"
       },
       "institutions": [
         {
           "id": "https://openalex.org/I1286329397",
           "display_name": "United States Geological Survey",
           "ror": "https://ror.org/035a68863",
           "country_code": "US",
           "type": "government",
           "lineage": [
             "https://openalex.org/I1286329397",
             "https://openalex.org/I1335927249"
           ]
         }
       ],
       "countries": [
         "US"
       ],
       "is_corresponding": false,
       "raw_author_name": "Noah S. Adams",
       "raw_affiliation_strings": [
         "U.S. Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA, USA"
       ],
       "affiliations": [
         {
           "raw_affiliation_string": "U.S. Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA, USA",
           "institution_ids": [
             "https://openalex.org/I1286329397"
           ]
         }
       ]
     }
   ],
   "best_oa_location": null,
   "biblio": {
     "volume": "96",
     "issue": "2-3",
     "first_page": "165",
     "last_page": "173"
   },
   "citation_normalized_percentile": {
     "value": 0.752319,
     "is_in_top_1_percent": false,
     "is_in_top_10_percent": false
   },
   "cited_by_api_url": "https://api.openalex.org/works?filter=cites:W2085894046",
   "cited_by_count": 13,
   "cited_by_percentile_year": {
     "min": 87,
     "max": 88
   },
   "concepts": [
     {
       "id": "https://openalex.org/C100398564",
       "wikidata": "https://www.wikidata.org/wiki/Q898845",
       "display_name": "Chinook wind",
       "level": 4,
       "score": 0.7756305
     },
     {
       "id": "https://openalex.org/C174030287",
       "wikidata": "https://www.wikidata.org/wiki/Q7414381",
       "display_name": "San Joaquin",
       "level": 2,
       "score": 0.6752748
     },
     {
       "id": "https://openalex.org/C2779140988",
       "wikidata": "https://www.wikidata.org/wiki/Q133325",
       "display_name": "Oncorhynchus",
       "level": 3,
       "score": 0.65861243
     },
     {
       "id": "https://openalex.org/C10515644",
       "wikidata": "https://www.wikidata.org/wiki/Q543310",
       "display_name": "Survival analysis",
       "level": 2,
       "score": 0.56782967
     },
     {
       "id": "https://openalex.org/C105795698",
       "wikidata": "https://www.wikidata.org/wiki/Q12483",
       "display_name": "Statistics",
       "level": 1,
       "score": 0.4783035
     },
     {
       "id": "https://openalex.org/C2909208804",
       "wikidata": "https://www.wikidata.org/wiki/Q127282",
       "display_name": "Fish <Actinopterygii>",
       "level": 2,
       "score": 0.45397827
     },
     {
       "id": "https://openalex.org/C204323151",
       "wikidata": "https://www.wikidata.org/wiki/Q905424",
       "display_name": "Range (aeronautics)",
       "level": 2,
       "score": 0.4308799
     },
     {
       "id": "https://openalex.org/C44249647",
       "wikidata": "https://www.wikidata.org/wiki/Q208498",
       "display_name": "Confidence interval",
       "level": 2,
       "score": 0.43050668
     },
     {
       "id": "https://openalex.org/C36528806",
       "wikidata": "https://www.wikidata.org/wiki/Q796147",
       "display_name": "Mark and recapture",
       "level": 3,
       "score": 0.42988276
     },
     {
       "id": "https://openalex.org/C205649164",
       "wikidata": "https://www.wikidata.org/wiki/Q1071",
       "display_name": "Geography",
       "level": 0,
       "score": 0.38442546
     },
     {
       "id": "https://openalex.org/C86803240",
       "wikidata": "https://www.wikidata.org/wiki/Q420",
       "display_name": "Biology",
       "level": 0,
       "score": 0.37011623
     },
     {
       "id": "https://openalex.org/C39432304",
       "wikidata": "https://www.wikidata.org/wiki/Q188847",
       "display_name": "Environmental science",
       "level": 0,
       "score": 0.35521704
     },
     {
       "id": "https://openalex.org/C149923435",
       "wikidata": "https://www.wikidata.org/wiki/Q37732",
       "display_name": "Demography",
       "level": 1,
       "score": 0.32397887
     },
     {
       "id": "https://openalex.org/C505870484",
       "wikidata": "https://www.wikidata.org/wiki/Q180538",
       "display_name": "Fishery",
       "level": 1,
       "score": 0.32352328
     },
     {
       "id": "https://openalex.org/C2908647359",
       "wikidata": "https://www.wikidata.org/wiki/Q2625603",
       "display_name": "Population",
       "level": 2,
       "score": 0.12463981
     },
     {
       "id": "https://openalex.org/C33923547",
       "wikidata": "https://www.wikidata.org/wiki/Q395",
       "display_name": "Mathematics",
       "level": 0,
       "score": 0.100375295
     },
     {
       "id": "https://openalex.org/C127413603",
       "wikidata": "https://www.wikidata.org/wiki/Q11023",
       "display_name": "Engineering",
       "level": 0,
       "score": 0.09235427
     },
     {
       "id": "https://openalex.org/C144024400",
       "wikidata": "https://www.wikidata.org/wiki/Q21201",
       "display_name": "Sociology",
       "level": 0,
       "score": 0.0
     },
     {
       "id": "https://openalex.org/C159390177",
       "wikidata": "https://www.wikidata.org/wiki/Q9161265",
       "display_name": "Soil science",
       "level": 1,
       "score": 0.0
     },
     {
       "id": "https://openalex.org/C146978453",
       "wikidata": "https://www.wikidata.org/wiki/Q3798668",
       "display_name": "Aerospace engineering",
       "level": 1,
       "score": 0.0
     }
   ],
   "corresponding_author_ids": [
     "https://openalex.org/A5013174057"
   ],
   "corresponding_institution_ids": [
     "https://openalex.org/I1286329397"
   ],
   "countries_distinct_count": 1,
   "counts_by_year": [
     {
       "year": 2024,
       "cited_by_count": 1
     },
     {
       "year": 2021,
       "cited_by_count": 1
     },
     {
       "year": 2020,
       "cited_by_count": 4
     },
     {
       "year": 2019,
       "cited_by_count": 2
     },
     {
       "year": 2016,
       "cited_by_count": 1
     },
     {
       "year": 2013,
       "cited_by_count": 3
     },
     {
       "year": 2012,
       "cited_by_count": 1
     }
   ],
   "created_date": "2016-06-24",
   "datasets": [],
   "display_name": "Adjusting survival estimates for premature transmitter failure: a case study from the Sacramento-San Joaquin Delta",
   "doi": "https://doi.org/10.1007/s10641-012-0016-3",
   "fulltext_origin": "ngrams",
   "fwci": 1.242,
   "grants": [],
   "has_fulltext": true,
   "id": "https://openalex.org/W2085894046",
   "ids": {
     "openalex": "https://openalex.org/W2085894046",
     "doi": "https://doi.org/10.1007/s10641-012-0016-3",
     "mag": "2085894046"
   },
   "indexed_in": [
     "crossref"
   ],
   "institutions_distinct_count": 2,
   "is_paratext": false,
   "is_retracted": false,
   "keywords": [
     {
       "id": "https://openalex.org/keywords/chinook-wind",
       "display_name": "Chinook wind",
       "score": 0.7756305
     },
     {
       "id": "https://openalex.org/keywords/san-joaquin",
       "display_name": "San Joaquin",
       "score": 0.6752748
     },
     {
       "id": "https://openalex.org/keywords/incomplete-data",
       "display_name": "Incomplete Data",
       "score": 0.481416
     },
     {
       "id": "https://openalex.org/keywords/mark-and-recapture",
       "display_name": "Mark and recapture",
       "score": 0.42988276
     }
   ],
   "language": "en",
   "locations": [
     {
       "is_oa": false,
       "landing_page_url": "https://doi.org/10.1007/s10641-012-0016-3",
       "pdf_url": null,
       "source": {
         "id": "https://openalex.org/S175181960",
         "display_name": "Environmental Biology of Fishes",
         "issn_l": "0378-1909",
         "issn": [
           "0378-1909",
           "1573-5133"
         ],
         "is_oa": false,
         "is_in_doaj": false,
         "is_core": true,
         "host_organization": "https://openalex.org/P4310319900",
         "host_organization_name": "Springer Science+Business Media",
         "host_organization_lineage": [
           "https://openalex.org/P4310319965",
           "https://openalex.org/P4310319900"
         ],
         "host_organization_lineage_names": [
           "Springer Nature",
           "Springer Science+Business Media"
         ],
         "type": "journal"
       },
       "license": null,
       "license_id": null,
       "version": null,
       "is_accepted": false,
       "is_published": false
     }
   ],
   "locations_count": 1,
   "mesh": [],
   "ngrams_url": "https://api.openalex.org/works/W2085894046/ngrams",
   "open_access": {
     "is_oa": false,
     "oa_status": "closed",
     "oa_url": null,
     "any_repository_has_fulltext": false
   },
   "primary_location": {
     "is_oa": false,
     "landing_page_url": "https://doi.org/10.1007/s10641-012-0016-3",
     "pdf_url": null,
     "source": {
       "id": "https://openalex.org/S175181960",
       "display_name": "Environmental Biology of Fishes",
       "issn_l": "0378-1909",
       "issn": [
         "0378-1909",
         "1573-5133"
       ],
       "is_oa": false,
       "is_in_doaj": false,
       "is_core": true,
       "host_organization": "https://openalex.org/P4310319900",
       "host_organization_name": "Springer Science+Business Media",
       "host_organization_lineage": [
         "https://openalex.org/P4310319965",
         "https://openalex.org/P4310319900"
       ],
       "host_organization_lineage_names": [
         "Springer Nature",
         "Springer Science+Business Media"
       ],
       "type": "journal"
     },
     "license": null,
     "license_id": null,
     "version": null,
     "is_accepted": false,
     "is_published": false
   },
   "primary_topic": {
     "id": "https://openalex.org/T10302",
     "display_name": "Importance and Conservation of Freshwater Biodiversity",
     "score": 0.9999,
     "subfield": {
       "id": "https://openalex.org/subfields/2309",
       "display_name": "Nature and Landscape Conservation"
     },
     "field": {
       "id": "https://openalex.org/fields/23",
       "display_name": "Environmental Science"
     },
     "domain": {
       "id": "https://openalex.org/domains/3",
       "display_name": "Physical Sciences"
     }
   },
   "publication_date": "2012-04-26",
   "publication_year": 2012,
   "referenced_works": [
     "https://openalex.org/W1560856348",
     "https://openalex.org/W1565631688",
     "https://openalex.org/W1849903151",
     "https://openalex.org/W1964104682",
     "https://openalex.org/W1973024154",
     "https://openalex.org/W1977065122",
     "https://openalex.org/W1982599756",
     "https://openalex.org/W2004458492",
     "https://openalex.org/W2044881087",
     "https://openalex.org/W2083253518",
     "https://openalex.org/W2133371793",
     "https://openalex.org/W2158891656",
     "https://openalex.org/W2166038367",
     "https://openalex.org/W2324452306",
     "https://openalex.org/W2582743722",
     "https://openalex.org/W3150756260",
     "https://openalex.org/W4245821118"
   ],
   "referenced_works_count": 17,
   "related_works": [
     "https://openalex.org/W6449196",
     "https://openalex.org/W2754977123",
     "https://openalex.org/W2587658278",
     "https://openalex.org/W2565529981",
     "https://openalex.org/W2546867564",
     "https://openalex.org/W2228106684",
     "https://openalex.org/W2034547784",
     "https://openalex.org/W2012575421",
     "https://openalex.org/W1974383763",
     "https://openalex.org/W1969289957"
   ],
   "sustainable_development_goals": [
     {
       "display_name": "Life below water",
       "id": "https://metadata.un.org/sdg/14",
       "score": 0.69
     }
   ],
   "title": "Adjusting survival estimates for premature transmitter failure: a case study from the Sacramento-San Joaquin Delta",
   "topics": [
     {
       "id": "https://openalex.org/T10302",
       "display_name": "Importance and Conservation of Freshwater Biodiversity",
       "score": 0.9999,
       "subfield": {
         "id": "https://openalex.org/subfields/2309",
         "display_name": "Nature and Landscape Conservation"
       },
       "field": {
         "id": "https://openalex.org/fields/23",
         "display_name": "Environmental Science"
       },
       "domain": {
         "id": "https://openalex.org/domains/3",
         "display_name": "Physical Sciences"
       }
     },
     {
       "id": "https://openalex.org/T10199",
       "display_name": "Wildlife Ecology and Conservation Biology",
       "score": 0.9804,
       "subfield": {
         "id": "https://openalex.org/subfields/2303",
         "display_name": "Ecology"
       },
       "field": {
         "id": "https://openalex.org/fields/23",
         "display_name": "Environmental Science"
       },
       "domain": {
         "id": "https://openalex.org/domains/3",
         "display_name": "Physical Sciences"
       }
     },
     {
       "id": "https://openalex.org/T13546",
       "display_name": "Estimation of Population Size Using Capture-Recapture Models",
       "score": 0.9781,
       "subfield": {
         "id": "https://openalex.org/subfields/2613",
         "display_name": "Statistics and Probability"
       },
       "field": {
         "id": "https://openalex.org/fields/26",
         "display_name": "Mathematics"
       },
       "domain": {
         "id": "https://openalex.org/domains/3",
         "display_name": "Physical Sciences"
       }
     }
   ],
   "type": "article",
   "type_crossref": "journal-article",
   "updated_date": "2024-08-14T07:15:04.647892",
   "versions": []
 }

}