Item talk:Q239441
From geokb
{
"USGS Publications Warehouse": {
"@context": "https://schema.org",
"@type": "Article",
"additionalType": "Journal Article",
"name": "Using optimal transport theory to estimate transition probabilities in metapopulation dynamics",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "70190134",
"url": "https://pubs.usgs.gov/publication/70190134"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 70190134
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.1016/j.ecolmodel.2017.06.003",
"url": "https://doi.org/10.1016/j.ecolmodel.2017.06.003"
}
],
"journal": {
"@type": "Periodical",
"name": "Ecological Modelling",
"volumeNumber": "359",
"issueNumber": null
},
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "Ecological Modelling"
}
],
"datePublished": "2017",
"dateModified": "2017-08-11",
"abstract": "This work considers the estimation of transition probabilities associated with populations moving among multiple spatial locations based on numbers of individuals at each location at two points in time. The problem is generally underdetermined as there exists an extremely large number of ways in which individuals can move from one set of locations to another. A unique solution therefore requires a constraint. The theory of optimal transport provides such a constraint in the form of a cost function, to be minimized in expectation over the space of possible transition matrices. We demonstrate the optimal transport approach on marked bird data and compare to the probabilities obtained via maximum likelihood estimation based on marked individuals. It is shown that by choosing the squared Euclidean distance as the cost, the estimated transition probabilities compare favorably to those obtained via maximum likelihood with marked individuals. Other implications of this cost are discussed, including the ability to accurately interpolate the population's spatial distribution at unobserved points in time and the more general relationship between the cost and minimum transport energy.",
"description": "9 p.",
"publisher": {
"@type": "Organization",
"name": "Elsevier"
},
"author": [
{
"@type": "Person",
"name": "Spendelow, Jeffrey A. jspendelow@usgs.gov",
"givenName": "Jeffrey A.",
"familyName": "Spendelow",
"email": "jspendelow@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0001-8167-0898",
"url": "https://orcid.org/0000-0001-8167-0898"
},
"affiliation": [
{
"@type": "Organization",
"name": "Patuxent Wildlife Research Center",
"url": "https://www.usgs.gov/centers/pwrc"
}
]
},
{
"@type": "Person",
"name": "Nichols, Jonathan M.",
"givenName": "Jonathan M.",
"familyName": "Nichols"
},
{
"@type": "Person",
"name": "Nichols, James D. jnichols@usgs.gov",
"givenName": "James D.",
"familyName": "Nichols",
"email": "jnichols@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-7631-2890",
"url": "https://orcid.org/0000-0002-7631-2890"
},
"affiliation": [
{
"@type": "Organization",
"name": "Patuxent Wildlife Research Center",
"url": "https://www.usgs.gov/centers/pwrc"
}
]
}
],
"funder": [
{
"@type": "Organization",
"name": "Patuxent Wildlife Research Center",
"url": "https://www.usgs.gov/centers/pwrc"
}
]
},
"OpenAlex": {
"abstract_inverted_index": {
"This": [
0
],
"work": [
1
],
"considers": [
2
],
"the": [
3,
72,
84,
92,
103,
120,
125,
127,
150,
155,
165,
170
],
"estimation": [
4,
109
],
"of": [
5,
19,
41,
51,
64,
74,
86,
144
],
"transition": [
6,
88,
129
],
"probabilities": [
7,
104,
130
],
"associated": [
8
],
"with": [
9,
139
],
"populations": [
10
],
"moving": [
11
],
"among": [
12
],
"multiple": [
13
],
"spatial": [
14,
157
],
"locations": [
15,
52
],
"based": [
16,
110
],
"on": [
17,
96,
111
],
"numbers": [
18
],
"individuals": [
20,
45
],
"at": [
21,
24,
159
],
"each": [
22
],
"location": [
23
],
"two": [
25
],
"points": [
26,
161
],
"in": [
27,
43,
71,
81,
162
],
"time.": [
28
],
"The": [
29,
62
],
"problem": [
30
],
"is": [
31,
115
],
"generally": [
32
],
"underdetermined": [
33
],
"as": [
34,
124
],
"there": [
35
],
"exists": [
36
],
"an": [
37
],
"extremely": [
38
],
"large": [
39
],
"number": [
40
],
"ways": [
42
],
"which": [
44
],
"can": [
46
],
"move": [
47
],
"from": [
48
],
"one": [
49
],
"set": [
50
],
"to": [
53,
78,
102,
133,
152
],
"another.": [
54
],
"A": [
55
],
"unique": [
56
],
"solution": [
57
],
"therefore": [
58
],
"requires": [
59
],
"a": [
60,
69,
75
],
"constraint.": [
61
],
"theory": [
63
],
"optimal": [
65,
93
],
"transport": [
66,
94,
174
],
"provides": [
67
],
"such": [
68
],
"constraint": [
70
],
"form": [
73
],
"cost": [
76,
146,
171
],
"function,": [
77
],
"be": [
79
],
"minimized": [
80
],
"expectation": [
82
],
"over": [
83
],
"space": [
85
],
"possible": [
87
],
"matrices.": [
89
],
"We": [
90
],
"demonstrate": [
91
],
"approach": [
95
],
"marked": [
97,
112,
140
],
"bird": [
98
],
"data": [
99
],
"and": [
100,
164,
172
],
"compare": [
101,
131
],
"obtained": [
105,
135
],
"via": [
106,
136
],
"maximum": [
107,
137
],
"likelihood": [
108,
138
],
"individuals.": [
113,
141
],
"It": [
114
],
"shown": [
116
],
"that": [
117
],
"by": [
118
],
"choosing": [
119
],
"squared": [
121
],
"Euclidean": [
122
],
"distance": [
123
],
"cost,": [
126
],
"estimated": [
128
],
"favorably": [
132
],
"those": [
134
],
"Other": [
142
],
"implications": [
143
],
"this": [
145
],
"are": [
147
],
"discussed,": [
148
],
"including": [
149
],
"ability": [
151
],
"accurately": [
153
],
"interpolate": [
154
],
"population's": [
156
],
"distribution": [
158
],
"unobserved": [
160
],
"time": [
163
],
"more": [
166
],
"general": [
167
],
"relationship": [
168
],
"between": [
169
],
"minimum": [
173
],
"energy.": [
175
]
},
"apc_list": {
"value": 2780,
"currency": "USD",
"value_usd": 2780,
"provenance": "doaj"
},
"apc_paid": null,
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5091802836",
"display_name": "Jonathan M. Nichols",
"orcid": "https://orcid.org/0000-0002-3173-4563"
},
"institutions": [
{
"id": "https://openalex.org/I1288214837",
"display_name": "United States Naval Research Laboratory",
"ror": "https://ror.org/04d23a975",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1288214837",
"https://openalex.org/I1330347796",
"https://openalex.org/I175003984",
"https://openalex.org/I3130687028",
"https://openalex.org/I4399598358"
]
}
],
"countries": [
"US"
],
"is_corresponding": true,
"raw_author_name": "J.M. Nichols",
"raw_affiliation_strings": [
"Naval Research Laboratory, 4555 Overlook Ave., Washington, D.C. 20375, United States"
],
"affiliations": [
{
"raw_affiliation_string": "Naval Research Laboratory, 4555 Overlook Ave., Washington, D.C. 20375, United States",
"institution_ids": [
"https://openalex.org/I1288214837"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5033187099",
"display_name": "Jeffrey A. Spendelow",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "J.A. Spendelow",
"raw_affiliation_strings": [
"U.S. Geological Survey, Patuxent Wildlife Research Center, Laurel, MD 20708, United States"
],
"affiliations": [
{
"raw_affiliation_string": "U.S. Geological Survey, Patuxent Wildlife Research Center, Laurel, MD 20708, United States",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "last",
"author": {
"id": "https://openalex.org/A5061761891",
"display_name": "James D. Nichols",
"orcid": "https://orcid.org/0000-0002-7631-2890"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "J.D. Nichols",
"raw_affiliation_strings": [
"U.S. Geological Survey, Patuxent Wildlife Research Center, Laurel, MD 20708, United States"
],
"affiliations": [
{
"raw_affiliation_string": "U.S. Geological Survey, Patuxent Wildlife Research Center, Laurel, MD 20708, United States",
"institution_ids": [
"https://openalex.org/I1286329397"
]
}
]
}
],
"best_oa_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1016/j.ecolmodel.2017.06.003",
"pdf_url": "http://manuscript.elsevier.com/S0304380017303253/pdf/S0304380017303253.pdf",
"source": {
"id": "https://openalex.org/S88315673",
"display_name": "Ecological Modelling",
"issn_l": "0304-3800",
"issn": [
"0304-3800",
"1872-7026"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310320990",
"host_organization_name": "Elsevier BV",
"host_organization_lineage": [
"https://openalex.org/P4310320990"
],
"host_organization_lineage_names": [
"Elsevier BV"
],
"type": "journal"
},
"license": "publisher-specific-oa",
"license_id": "https://openalex.org/licenses/publisher-specific-oa",
"version": "acceptedVersion",
"is_accepted": true,
"is_published": false
},
"biblio": {
"volume": "359",
"issue": null,
"first_page": "311",
"last_page": "319"
},
"citation_normalized_percentile": {
"value": 0.740116,
"is_in_top_1_percent": false,
"is_in_top_10_percent": false
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W2743273746",
"cited_by_count": 7,
"cited_by_percentile_year": {
"min": 84,
"max": 85
},
"concepts": [
{
"id": "https://openalex.org/C189569837",
"wikidata": "https://www.wikidata.org/wiki/Q954495",
"display_name": "Metapopulation",
"level": 4,
"score": 0.74175936
},
{
"id": "https://openalex.org/C2776036281",
"wikidata": "https://www.wikidata.org/wiki/Q48769818",
"display_name": "Constraint (computer-aided design)",
"level": 2,
"score": 0.672948
},
{
"id": "https://openalex.org/C33923547",
"wikidata": "https://www.wikidata.org/wiki/Q395",
"display_name": "Mathematics",
"level": 0,
"score": 0.50402945
},
{
"id": "https://openalex.org/C14036430",
"wikidata": "https://www.wikidata.org/wiki/Q3736076",
"display_name": "Function (biology)",
"level": 2,
"score": 0.4812962
},
{
"id": "https://openalex.org/C2908647359",
"wikidata": "https://www.wikidata.org/wiki/Q2625603",
"display_name": "Population",
"level": 2,
"score": 0.44847912
},
{
"id": "https://openalex.org/C177264268",
"wikidata": "https://www.wikidata.org/wiki/Q1514741",
"display_name": "Set (abstract data type)",
"level": 2,
"score": 0.447188
},
{
"id": "https://openalex.org/C126255220",
"wikidata": "https://www.wikidata.org/wiki/Q141495",
"display_name": "Mathematical optimization",
"level": 1,
"score": 0.44438204
},
{
"id": "https://openalex.org/C2778572836",
"wikidata": "https://www.wikidata.org/wiki/Q380933",
"display_name": "Space (punctuation)",
"level": 2,
"score": 0.4267739
},
{
"id": "https://openalex.org/C105795698",
"wikidata": "https://www.wikidata.org/wiki/Q12483",
"display_name": "Statistics",
"level": 1,
"score": 0.36815143
},
{
"id": "https://openalex.org/C41008148",
"wikidata": "https://www.wikidata.org/wiki/Q21198",
"display_name": "Computer science",
"level": 0,
"score": 0.33869976
},
{
"id": "https://openalex.org/C47559259",
"wikidata": "https://www.wikidata.org/wiki/Q778143",
"display_name": "Biological dispersal",
"level": 3,
"score": 0.13812196
},
{
"id": "https://openalex.org/C2524010",
"wikidata": "https://www.wikidata.org/wiki/Q8087",
"display_name": "Geometry",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C149923435",
"wikidata": "https://www.wikidata.org/wiki/Q37732",
"display_name": "Demography",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C78458016",
"wikidata": "https://www.wikidata.org/wiki/Q840400",
"display_name": "Evolutionary biology",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C144024400",
"wikidata": "https://www.wikidata.org/wiki/Q21201",
"display_name": "Sociology",
"level": 0,
"score": 0.0
},
{
"id": "https://openalex.org/C86803240",
"wikidata": "https://www.wikidata.org/wiki/Q420",
"display_name": "Biology",
"level": 0,
"score": 0.0
},
{
"id": "https://openalex.org/C199360897",
"wikidata": "https://www.wikidata.org/wiki/Q9143",
"display_name": "Programming language",
"level": 1,
"score": 0.0
},
{
"id": "https://openalex.org/C111919701",
"wikidata": "https://www.wikidata.org/wiki/Q9135",
"display_name": "Operating system",
"level": 1,
"score": 0.0
}
],
"corresponding_author_ids": [
"https://openalex.org/A5091802836"
],
"corresponding_institution_ids": [
"https://openalex.org/I1288214837"
],
"countries_distinct_count": 1,
"counts_by_year": [
{
"year": 2022,
"cited_by_count": 1
},
{
"year": 2021,
"cited_by_count": 2
},
{
"year": 2020,
"cited_by_count": 2
},
{
"year": 2019,
"cited_by_count": 1
},
{
"year": 2018,
"cited_by_count": 1
}
],
"created_date": "2017-08-17",
"datasets": [],
"display_name": "Using Optimal Transport Theory to Estimate Transition Probabilities in Metapopulation Dynamics",
"doi": "https://doi.org/10.1016/j.ecolmodel.2017.06.003",
"fulltext_origin": "ngrams",
"fwci": 0.927,
"grants": [],
"has_fulltext": true,
"id": "https://openalex.org/W2743273746",
"ids": {
"openalex": "https://openalex.org/W2743273746",
"doi": "https://doi.org/10.1016/j.ecolmodel.2017.06.003",
"mag": "2743273746"
},
"indexed_in": [
"crossref"
],
"institutions_distinct_count": 2,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/metapopulation",
"display_name": "Metapopulation",
"score": 0.74175936
},
{
"id": "https://openalex.org/keywords/habitat-selection",
"display_name": "Habitat Selection",
"score": 0.494037
}
],
"language": "en",
"locations": [
{
"is_oa": true,
"landing_page_url": "https://doi.org/10.1016/j.ecolmodel.2017.06.003",
"pdf_url": "http://manuscript.elsevier.com/S0304380017303253/pdf/S0304380017303253.pdf",
"source": {
"id": "https://openalex.org/S88315673",
"display_name": "Ecological Modelling",
"issn_l": "0304-3800",
"issn": [
"0304-3800",
"1872-7026"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310320990",
"host_organization_name": "Elsevier BV",
"host_organization_lineage": [
"https://openalex.org/P4310320990"
],
"host_organization_lineage_names": [
"Elsevier BV"
],
"type": "journal"
},
"license": "publisher-specific-oa",
"license_id": "https://openalex.org/licenses/publisher-specific-oa",
"version": "acceptedVersion",
"is_accepted": true,
"is_published": false
}
],
"locations_count": 1,
"mesh": [],
"ngrams_url": "https://api.openalex.org/works/W2743273746/ngrams",
"open_access": {
"is_oa": true,
"oa_status": "bronze",
"oa_url": "http://manuscript.elsevier.com/S0304380017303253/pdf/S0304380017303253.pdf",
"any_repository_has_fulltext": false
},
"primary_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1016/j.ecolmodel.2017.06.003",
"pdf_url": "http://manuscript.elsevier.com/S0304380017303253/pdf/S0304380017303253.pdf",
"source": {
"id": "https://openalex.org/S88315673",
"display_name": "Ecological Modelling",
"issn_l": "0304-3800",
"issn": [
"0304-3800",
"1872-7026"
],
"is_oa": false,
"is_in_doaj": false,
"is_core": true,
"host_organization": "https://openalex.org/P4310320990",
"host_organization_name": "Elsevier BV",
"host_organization_lineage": [
"https://openalex.org/P4310320990"
],
"host_organization_lineage_names": [
"Elsevier BV"
],
"type": "journal"
},
"license": "publisher-specific-oa",
"license_id": "https://openalex.org/licenses/publisher-specific-oa",
"version": "acceptedVersion",
"is_accepted": true,
"is_published": false
},
"primary_topic": {
"id": "https://openalex.org/T10005",
"display_name": "Biodiversity Conservation and Ecosystem Management",
"score": 0.9994,
"subfield": {
"id": "https://openalex.org/subfields/2309",
"display_name": "Nature and Landscape Conservation"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
"publication_date": "2017-09-01",
"publication_year": 2017,
"referenced_works": [
"https://openalex.org/W1478699982",
"https://openalex.org/W1487517804",
"https://openalex.org/W1491456881",
"https://openalex.org/W1519887566",
"https://openalex.org/W1601934906",
"https://openalex.org/W1964941349",
"https://openalex.org/W1966710059",
"https://openalex.org/W1975479881",
"https://openalex.org/W1982338051",
"https://openalex.org/W1984159504",
"https://openalex.org/W1985506636",
"https://openalex.org/W1985924950",
"https://openalex.org/W1988787629",
"https://openalex.org/W1992133576",
"https://openalex.org/W1998569713",
"https://openalex.org/W1999312838",
"https://openalex.org/W2002646551",
"https://openalex.org/W2004778468",
"https://openalex.org/W2010555875",
"https://openalex.org/W2021593845",
"https://openalex.org/W2035245238",
"https://openalex.org/W2036226479",
"https://openalex.org/W2052274922",
"https://openalex.org/W2057314736",
"https://openalex.org/W2071603030",
"https://openalex.org/W2080396854",
"https://openalex.org/W2083155027",
"https://openalex.org/W2091202128",
"https://openalex.org/W2113634313",
"https://openalex.org/W2129195023",
"https://openalex.org/W2134924002",
"https://openalex.org/W2145936352",
"https://openalex.org/W2167169890",
"https://openalex.org/W2168354561",
"https://openalex.org/W2200013912",
"https://openalex.org/W2316371504",
"https://openalex.org/W2468963236",
"https://openalex.org/W2495707216",
"https://openalex.org/W2537189042",
"https://openalex.org/W2562710354",
"https://openalex.org/W2963559326",
"https://openalex.org/W385466589",
"https://openalex.org/W4210829811",
"https://openalex.org/W4248220600",
"https://openalex.org/W4293517778",
"https://openalex.org/W433032344",
"https://openalex.org/W4388324015",
"https://openalex.org/W649888743"
],
"referenced_works_count": 48,
"related_works": [
"https://openalex.org/W4256617386",
"https://openalex.org/W4206603947",
"https://openalex.org/W3031864658",
"https://openalex.org/W3030042607",
"https://openalex.org/W2393573535",
"https://openalex.org/W2383918176",
"https://openalex.org/W2075736091",
"https://openalex.org/W2067056526",
"https://openalex.org/W2018503327",
"https://openalex.org/W1606426756"
],
"sustainable_development_goals": [],
"title": "Using Optimal Transport Theory to Estimate Transition Probabilities in Metapopulation Dynamics",
"topics": [
{
"id": "https://openalex.org/T10005",
"display_name": "Biodiversity Conservation and Ecosystem Management",
"score": 0.9994,
"subfield": {
"id": "https://openalex.org/subfields/2309",
"display_name": "Nature and Landscape Conservation"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
{
"id": "https://openalex.org/T10199",
"display_name": "Wildlife Ecology and Conservation Biology",
"score": 0.9992,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
},
{
"id": "https://openalex.org/T11913",
"display_name": "Ecological Impact of Invasive Species on Islands",
"score": 0.9983,
"subfield": {
"id": "https://openalex.org/subfields/2303",
"display_name": "Ecology"
},
"field": {
"id": "https://openalex.org/fields/23",
"display_name": "Environmental Science"
},
"domain": {
"id": "https://openalex.org/domains/3",
"display_name": "Physical Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-09T06:17:05.147145",
"versions": []
}
}
