Item talk:Q274126
From geokb
{
"USGS Publications Warehouse": { "@context": "https://schema.org", "@type": "Article", "additionalType": "Journal Article", "name": "Global genetic diversity status and trends: Towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition", "identifier": [ { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse IndexID", "value": "70230564", "url": "https://pubs.usgs.gov/publication/70230564" }, { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse Internal ID", "value": 70230564 }, { "@type": "PropertyValue", "propertyID": "DOI", "value": "10.1111/brv.12852", "url": "https://doi.org/10.1111/brv.12852" } ], "journal": { "@type": "Periodical", "name": "Biological Reviews", "volumeNumber": "97", "issueNumber": "4" }, "inLanguage": "en", "isPartOf": [ { "@type": "CreativeWorkSeries", "name": "Biological Reviews" } ], "datePublished": "2022", "dateModified": "2022-07-07", "abstract": "Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well-being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with numerous methods, and stored in inconsistent ways. The Group on Earth Observations Biodiversity Observation Network (GEO BON) has developed the Essential Biodiversity Variables (EBVs) as fundamental metrics to help aggregate, harmonize, and interpret biodiversity observation data from diverse sources. Mapping and analyzing EBVs can help to evaluate how aspects of biodiversity are distributed geographically and how they change over time. EBVs are also intended to serve as inputs and validation to forecast the status and trends of biodiversity, and to support policy and decision making. Here, we assess the feasibility of implementing Genetic Composition EBVs (Genetic EBVs), which are metrics of within-species genetic variation. We review and bring together numerous areas of the field of genetics and evaluate how each contributes to global and regional genetic biodiversity monitoring with respect to theory, sampling logistics, metadata, archiving, data aggregation, modeling, and technological advances. We propose four Genetic EBVs: (i) Genetic Diversity; (ii) Genetic Differentiation; (iii) Inbreeding; and (iv) Effective Population Size (Ne). We rank Genetic EBVs according to their relevance, sensitivity to change, generalizability, scalability, feasibility and data availability. We outline the workflow for generating genetic data underlying the Genetic EBVs, and review advances and needs in archiving genetic composition data and metadata. We discuss how Genetic EBVs can be operationalized by visualizing EBVs in space and time across species and by forecasting Genetic EBVs beyond current observations using various modeling approaches. Our review then explores challenges of aggregation, standardization, and costs of operationalizing the Genetic EBVs, as well as future directions and opportunities to maximize their uptake globally in research and policy. The collection, annotation, and availability of genetic data has made major advances in the past decade, each of which contributes to the practical and standardized framework for large-scale genetic observation reporting. Rapid advances in DNA sequencing technology present new opportunities, but also challenges for operationalizing Genetic EBVs for biodiversity monitoring regionally and globally. With these advances, genetic composition monitoring is starting to be integrated into global conservation policy, which can help support the foundation of all biodiversity and species' long-term persistence in the face of environmental change. We conclude with a summary of concrete steps for researchers and policy makers for advancing operationalization of Genetic EBVs. The technical and analytical foundations of Genetic EBVs are well developed, and conservation practitioners should anticipate their increasing application as efforts emerge to scale up genetic biodiversity monitoring regionally and globally.", "description": "28 p.", "publisher": { "@type": "Organization", "name": "Wiley" }, "author": [ { "@type": "Person", "name": "Vernesi, Cristiano", "givenName": "Cristiano", "familyName": "Vernesi", "affiliation": [ { "@type": "Organization", "name": "Dept. of Sustainable Agroecosystems and Bioresources, Research and Innovation Centre - Fondazione Edmund Mach" } ] }, { "@type": "Person", "name": "Razgour, Orly", "givenName": "Orly", "familyName": "Razgour", "affiliation": [ { "@type": "Organization", "name": "University of Exeter" } ] }, { "@type": "Person", "name": "Potter, Kevin M.", "givenName": "Kevin M.", "familyName": "Potter", "affiliation": [ { "@type": "Organization", "name": "Department of Forestry and Environmental Resources, North Carolina State University" } ] }, { "@type": "Person", "name": "Paz-Vinas, Ivan", "givenName": "Ivan", "familyName": "Paz-Vinas", "affiliation": [ { "@type": "Organization", "name": "Laboratoire Ecologie Fonctionnelle et Environnement, Universit\u00e9 de Toulouse" } ] }, { "@type": "Person", "name": "O'Brien, David", "givenName": "David", "familyName": "O'Brien" }, { "@type": "Person", "name": "Muller-Karger, Frank", "givenName": "Frank", "familyName": "Muller-Karger", "affiliation": [ { "@type": "Organization", "name": "University of South Florida" } ] }, { "@type": "Person", "name": "Miller, Joshua M.", "givenName": "Joshua M.", "familyName": "Miller", "affiliation": [ { "@type": "Organization", "name": "MacEwan University" } ] }, { "@type": "Person", "name": "Mergeay, Joachim", "givenName": "Joachim", "familyName": "Mergeay", "affiliation": [ { "@type": "Organization", "name": "Research Institute for Nature and Forest" } ] }, { "@type": "Person", "name": "MacDonald, Anna J.", "givenName": "Anna J.", "familyName": "MacDonald", "affiliation": [ { "@type": "Organization", "name": "The Australian National University, John Curtin School of Medical Research and Research School of Biology, Canberra, Australia" } ] }, { "@type": "Person", "name": "Liggins, Libby", "givenName": "Libby", "familyName": "Liggins", "affiliation": [ { "@type": "Organization", "name": "School of Natural and Computational Sciences, Massey University" } ] }, { "@type": "Person", "name": "Kershaw, Francine", "givenName": "Francine", "familyName": "Kershaw", "affiliation": [ { "@type": "Organization", "name": "Natural Resources Defense Council, New York" } ] }, { "@type": "Person", "name": "Johnson, Jeremy S.", "givenName": "Jeremy S.", "familyName": "Johnson", "affiliation": [ { "@type": "Organization", "name": "Prescott College" } ] }, { "@type": "Person", "name": "Jensen, Evelyn", "givenName": "Evelyn", "familyName": "Jensen", "affiliation": [ { "@type": "Organization", "name": "Newcastle University" } ] }, { "@type": "Person", "name": "Jaff\u00e9, Rodolfo", "givenName": "Rodolfo", "familyName": "Jaff\u00e9", "affiliation": [ { "@type": "Organization", "name": "Instituto Tecnol\u00f3gico Vale, Rua Boaventura da Silva #955, 66055-090 Bel\u00e9m, PA, Brazil" } ] }, { "@type": "Person", "name": "Hand, Brian K.", "givenName": "Brian K.", "familyName": "Hand", "affiliation": [ { "@type": "Organization", "name": "Flathead Lake Biological Station, Fish and Wildlife Genomics Group, University of Montana, Polson, MT 59860" } ] }, { "@type": "Person", "name": "Grueber, Catherine E.", "givenName": "Catherine E.", "familyName": "Grueber", "affiliation": [ { "@type": "Organization", "name": "School of Life and Environmental Sciences, Faculty of Science, The University of Sydney" } ] }, { "@type": "Person", "name": "Funk, W. Chris", "givenName": "W. Chris", "familyName": "Funk", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0002-9254-6718", "url": "https://orcid.org/0000-0002-9254-6718" } }, { "@type": "Person", "name": "Ekblom, Robert", "givenName": "Robert", "familyName": "Ekblom", "affiliation": [ { "@type": "Organization", "name": "Swedish Environmental Protection Agency, SE, 106 48, Stockholm, Sweden" } ] }, { "@type": "Person", "name": "Coleman, Melinda A.", "givenName": "Melinda A.", "familyName": "Coleman", "affiliation": [ { "@type": "Organization", "name": "New South Wales Fisheries, National Marine Science Centre" } ] }, { "@type": "Person", "name": "Bruford, Michael W.", "givenName": "Michael W.", "familyName": "Bruford" }, { "@type": "Person", "name": "Breed, Martin F.", "givenName": "Martin F.", "familyName": "Breed", "affiliation": [ { "@type": "Organization", "name": "College of Science and Engineering, Flinders University, Bedford Park, SA 5042, Australia" } ] }, { "@type": "Person", "name": "Bragg, Jason G.", "givenName": "Jason G.", "familyName": "Bragg", "affiliation": [ { "@type": "Organization", "name": "Australian Institute of Botanical Science, The Royal Botanic Garden Sydney" } ] }, { "@type": "Person", "name": "Bertola, Laura D.", "givenName": "Laura D.", "familyName": "Bertola", "affiliation": [ { "@type": "Organization", "name": "City College of New York" } ] }, { "@type": "Person", "name": "Archer, Frederick I.", "givenName": "Frederick I.", "familyName": "Archer", "affiliation": [ { "@type": "Organization", "name": "NOAA/NMFS" } ] }, { "@type": "Person", "name": "Hoban, Sean M.", "givenName": "Sean M.", "familyName": "Hoban", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0002-0348-8449", "url": "https://orcid.org/0000-0002-0348-8449" }, "affiliation": [ { "@type": "Organization", "name": "The Morton Arboretum" } ] }, { "@type": "Person", "name": "Hunter, Maggie", "givenName": "Maggie", "familyName": "Hunter", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0002-4760-9302", "url": "https://orcid.org/0000-0002-4760-9302" }, "affiliation": [ { "@type": "Organization", "name": "Wetland and Aquatic Research Center", "url": "https://www.usgs.gov/centers/wetland-and-aquatic-research-center" } ] } ], "funder": [ { "@type": "Organization", "name": "Wetland and Aquatic Research Center", "url": "https://www.usgs.gov/centers/wetland-and-aquatic-research-center" } ] }, "OpenAlex": { "_id": "https://openalex.org/W4223417816", "abstract_inverted_index": { "Biodiversity": [ 0, 59, 68 ], "underlies": [ 1 ], "ecosystem": [ 2, 4 ], "resilience,": [ 3 ], "function,": [ 5 ], "sustainable": [ 6 ], "economies,": [ 7 ], "and": [ 8, 19, 29, 40, 49, 78, 87, 101, 115, 121, 125, 129, 153, 163, 170, 186, 202, 223, 238, 241, 248, 263, 267, 287, 299, 308, 313, 333, 361, 387, 407, 418, 427, 445 ], "human": [ 9 ], "well-being.": [ 10 ], "Understanding": [ 11 ], "how": [ 12, 94, 102, 165, 252 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"https://orcid.org/0000-0002-0348-8449" }, "institutions": [ { "id": "https://openalex.org/I2801669685", "display_name": "Morton Arboretum", "ror": "https://ror.org/016s23c19", "country_code": "US", "type": "archive", "lineage": [ "https://openalex.org/I2801669685" ] }, { "id": "https://openalex.org/I4210161504", "display_name": "International Union for Conservation of Nature", "ror": "https://ror.org/04tehfn33", "country_code": "CH", "type": "nonprofit", "lineage": [ "https://openalex.org/I4210161504" ] } ], "countries": [ "CH", "US" ], "is_corresponding": false, "raw_author_name": "Sean Hoban", "raw_affiliation_strings": [ "Center for Tree Science, The Morton Arboretum, 4100 Illinois Rt 53, Lisle, IL, 60532 USA", "Conservation Genetics Specialist Group, International Union for Conservation of Nature (IUCN), 1196 Gland, Switzerland.", "Group on Earth Observation Biodiversity Observation Network." ], "affiliations": [ { "raw_affiliation_string": "Center for Tree Science, The Morton Arboretum, 4100 Illinois Rt 53, Lisle, IL, 60532 USA", "institution_ids": [ "https://openalex.org/I2801669685" ] }, { "raw_affiliation_string": "Conservation Genetics Specialist Group, International Union for Conservation of Nature (IUCN), 1196 Gland, Switzerland.", "institution_ids": [ "https://openalex.org/I4210161504" ] }, { "raw_affiliation_string": "Group on Earth Observation Biodiversity Observation Network.", "institution_ids": [] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5086348854", "display_name": "Frederick I. Archer", "orcid": "https://orcid.org/0000-0002-3179-4769" }, "institutions": [ { "id": "https://openalex.org/I4210109599", "display_name": "NOAA National Marine Fisheries Service Southwest Fisheries Science Center", "ror": "https://ror.org/022d75229", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I106745318", "https://openalex.org/I1308126019", "https://openalex.org/I1343035065", "https://openalex.org/I4210109599" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Frederick I. Archer", "raw_affiliation_strings": [ "Group on Earth Observation Biodiversity Observation Network.", "Southwest Fisheries Science Center, NOAA/NMFS, 8901 La Jolla Shores Drive, La Jolla, CA, 92037 USA" ], "affiliations": [ { "raw_affiliation_string": "Southwest Fisheries Science Center, NOAA/NMFS, 8901 La Jolla Shores Drive, La Jolla, CA, 92037 USA", "institution_ids": [ "https://openalex.org/I4210109599" ] }, { "raw_affiliation_string": "Group on Earth Observation Biodiversity Observation Network.", "institution_ids": [] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5022447386", "display_name": "Laura D. Bertola", "orcid": "https://orcid.org/0000-0002-3445-0355" }, "institutions": [ { "id": "https://openalex.org/I125687163", "display_name": "City College of New York", "ror": "https://ror.org/00wmhkr98", "country_code": "US", "type": "education", "lineage": [ "https://openalex.org/I125687163" ] }, { "id": "https://openalex.org/I4210161504", "display_name": "International Union for Conservation of Nature", "ror": "https://ror.org/04tehfn33", "country_code": "CH", "type": "nonprofit", "lineage": [ "https://openalex.org/I4210161504" ] } ], "countries": [ "CH", "US" ], "is_corresponding": false, "raw_author_name": "Laura D. Bertola", "raw_affiliation_strings": [ "City College of New York, 160 Convent Avenue, New York, NY, 10031 USA", "Conservation Genetics Specialist Group, International Union for Conservation of Nature (IUCN), 1196 Gland, Switzerland.", "Group on Earth Observation Biodiversity Observation Network." ], "affiliations": [ { "raw_affiliation_string": "City College of New York, 160 Convent Avenue, New York, NY, 10031 USA", "institution_ids": [ "https://openalex.org/I125687163" ] }, { "raw_affiliation_string": "Group on Earth Observation Biodiversity Observation Network.", "institution_ids": [] }, { "raw_affiliation_string": "Conservation Genetics Specialist Group, International Union for Conservation of Nature (IUCN), 1196 Gland, Switzerland.", "institution_ids": [ "https://openalex.org/I4210161504" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5063959150", "display_name": "Jason G. Bragg", "orcid": "https://orcid.org/0000-0002-7621-7295" }, "institutions": [ { "id": "https://openalex.org/I4210130668", "display_name": "Royal Botanic Garden Sydney", "ror": "https://ror.org/03nw3dq29", "country_code": "AU", "type": "government", "lineage": [ "https://openalex.org/I4210130668" ] } ], "countries": [ "AU" ], "is_corresponding": false, "raw_author_name": "Jason G. Bragg", "raw_affiliation_strings": [ "Group on Earth Observation Biodiversity Observation Network.", "Research Centre for Ecosystem Resilience, Australian Institute of Botanical Science, The Royal Botanic Garden Sydney, Mrs Macquaries Rd, Sydney, NSW, 2000 Australia" ], "affiliations": [ { "raw_affiliation_string": "Research Centre for Ecosystem Resilience, Australian Institute of Botanical Science, The Royal Botanic Garden Sydney, Mrs Macquaries Rd, Sydney, NSW, 2000 Australia", "institution_ids": [ "https://openalex.org/I4210130668" ] }, { "raw_affiliation_string": "Group on Earth Observation Biodiversity Observation Network.", "institution_ids": [] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5089513365", "display_name": "Martin F. Breed", "orcid": "https://orcid.org/0000-0001-7810-9696" }, "institutions": [ { "id": "https://openalex.org/I169541294", "display_name": "Flinders University", "ror": "https://ror.org/01kpzv902", "country_code": "AU", "type": "education", "lineage": [ "https://openalex.org/I169541294" ] }, { "id": "https://openalex.org/I4210161504", "display_name": "International Union for Conservation of Nature", "ror": "https://ror.org/04tehfn33", "country_code": "CH", "type": "nonprofit", "lineage": [ "https://openalex.org/I4210161504" ] } ], "countries": [ "AU", "CH" ], "is_corresponding": false, "raw_author_name": "Martin F. Breed", "raw_affiliation_strings": [ "College of Science and Engineering, Flinders University, University Drive, Bedford Park, SA, 5042 Australia", "Conservation Genetics Specialist Group, International Union for Conservation of Nature (IUCN), 1196 Gland, Switzerland.", "Group on Earth Observation Biodiversity Observation Network." ], "affiliations": [ { "raw_affiliation_string": "College of Science and Engineering, Flinders University, University Drive, Bedford Park, SA, 5042 Australia", "institution_ids": [ "https://openalex.org/I169541294" ] }, { "raw_affiliation_string": "Group on Earth Observation Biodiversity Observation Network.", "institution_ids": [] }, { "raw_affiliation_string": "Conservation Genetics Specialist Group, International Union for Conservation of Nature (IUCN), 1196 Gland, Switzerland.", "institution_ids": [ "https://openalex.org/I4210161504" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5066987950", "display_name": "Michael W. Bruford", "orcid": "https://orcid.org/0000-0001-6357-6080" }, "institutions": [ { "id": "https://openalex.org/I79510175", "display_name": "Cardiff University", "ror": "https://ror.org/03kk7td41", "country_code": "GB", "type": "education", "lineage": [ "https://openalex.org/I79510175" ] }, { "id": "https://openalex.org/I4210161504", "display_name": "International Union for Conservation of Nature", "ror": "https://ror.org/04tehfn33", "country_code": "CH", "type": "nonprofit", "lineage": [ "https://openalex.org/I4210161504" ] } ], "countries": [ "CH", "GB" ], "is_corresponding": false, "raw_author_name": "Michael W. 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