Item talk:Q254864
From geokb
{
"USGS Publications Warehouse": {
"@context": "https://schema.org",
"@type": "Article",
"additionalType": "Journal Article",
"name": "Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus)",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "70256537",
"url": "https://pubs.usgs.gov/publication/70256537"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 70256537
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.1099/mgen.0.001214",
"url": "https://doi.org/10.1099/mgen.0.001214"
}
],
"journal": {
"@type": "Periodical",
"name": "Microbial Genomics",
"volumeNumber": "10",
"issueNumber": null
},
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "Microbial Genomics"
}
],
"datePublished": "2024",
"dateModified": "2024-08-08",
"abstract": "With emerging infectious disease outbreaks in human, domestic and wild animal populations on the rise, improvements in pathogen characterization and surveillance are paramount for the protection of human and animal health, as well as the conservation of ecologically and economically important wildlife. Genomics offers a range of suitable tools to meet these goals, with metagenomic sequencing facilitating the characterization of whole microbial communities associated with emerging and endemic disease outbreaks. Here, we use metagenomic sequencing in a case-control study to identify microbes in lung tissue associated with newly observed pneumonia-related fatalities in 34 white-tailed deer (Odocoileus virginianus) in Wisconsin, USA. We identified 20 bacterial species that occurred in more than a single individual. Of these, only\u00a0Clostridium novyi\u00a0was found to substantially differ (in number of detections) between case and control sample groups; however, this difference was not statistically significant. We also detected several bacterial species associated with pneumonia and/or other diseases in ruminants (Mycoplasma ovipneumoniae,\u00a0Trueperella pyogenes,\u00a0Pasteurella multocida,\u00a0Anaplasma phagocytophilum,\u00a0Fusobacterium necrophorum); however, these species did not substantially differ between case and control sample groups. On average, we detected a larger number of bacterial species in case samples than controls, supporting the potential role of polymicrobial infections in this system. Importantly, we did not detect DNA of viruses or fungi, suggesting that they are not significantly associated with pneumonia in this system. Together, these results highlight the utility of metagenomic sequencing for identifying disease-associated microbes. This preliminary list of microbes will help inform future research on pneumonia-associated fatalities of white-tailed deer.",
"description": "001214, 13 p.",
"publisher": {
"@type": "Organization",
"name": "Microbiology Society"
},
"author": [
{
"@type": "Person",
"name": "Prentice, Melanie B.",
"givenName": "Melanie B.",
"familyName": "Prentice",
"affiliation": [
{
"@type": "Organization",
"name": "University of Maine"
}
]
},
{
"@type": "Person",
"name": "Gilbertson, Marie L.J.",
"givenName": "Marie L.J.",
"familyName": "Gilbertson",
"affiliation": [
{
"@type": "Organization",
"name": "University of Wisconsin-Madison"
}
]
},
{
"@type": "Person",
"name": "Storm, Daniel J.",
"givenName": "Daniel J.",
"familyName": "Storm",
"affiliation": [
{
"@type": "Organization",
"name": "Wisconsin Department of Natural Resources"
}
]
},
{
"@type": "Person",
"name": "Roy, Allison H. aroy@usgs.gov",
"givenName": "Allison H.",
"familyName": "Roy",
"email": "aroy@usgs.gov",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-8080-2729",
"url": "https://orcid.org/0000-0002-8080-2729"
},
"affiliation": [
{
"@type": "Organization",
"name": "Coop Res Unit Leetown",
"url": "https://www1.usgs.gov/coopunits/unit/Virginia"
}
]
},
{
"@type": "Person",
"name": "Walsh, Daniel P.",
"givenName": "Daniel P.",
"familyName": "Walsh",
"identifier": {
"@type": "PropertyValue",
"propertyID": "ORCID",
"value": "0000-0002-7772-2445",
"url": "https://orcid.org/0000-0002-7772-2445"
},
"affiliation": [
{
"@type": "Organization",
"name": "National Wildlife Health Center",
"url": "https://www.usgs.gov/centers/nwhc"
}
]
},
{
"@type": "Person",
"name": "Pinkerton, Marie E.",
"givenName": "Marie E.",
"familyName": "Pinkerton",
"affiliation": [
{
"@type": "Organization",
"name": "Wisconsin Department of Natural Resources"
}
]
},
{
"@type": "Person",
"name": "Kamath, Pauline L.",
"givenName": "Pauline L.",
"familyName": "Kamath",
"affiliation": [
{
"@type": "Organization",
"name": "University of Maine"
}
]
}
],
"funder": [
{
"@type": "Organization",
"name": "Coop Res Unit Leetown",
"url": "https://www1.usgs.gov/coopunits/unit/Virginia"
},
{
"@type": "Organization",
"name": "National Wildlife Health Center",
"url": "https://www.usgs.gov/centers/nwhc"
}
]
},
"OpenAlex": {
"_id": "https://openalex.org/w4393220021",
"abstract_inverted_index": {
"With": [
0
],
"emerging": [
1,
65
],
"infectious": [
2
],
"disease": [
3,
68
],
"outbreaks": [
4
],
"in": [
5,
16,
75,
82,
91,
99,
109,
154,
195,
207,
229
],
"human,": [
6
],
"domestic": [
7
],
"and": [
8,
19,
28,
38,
66,
131,
181
],
"wild": [
9
],
"animal": [
10,
29
],
"populations": [
11
],
"on": [
12,
255
],
"the": [
13,
24,
34,
57,
201,
236
],
"rise,": [
14
],
"improvements": [
15
],
"pathogen": [
17
],
"characterization": [
18,
58
],
"surveillance": [
20
],
"are": [
21,
223
],
"paramount": [
22
],
"for": [
23,
241
],
"protection": [
25
],
"of": [
26,
36,
46,
59,
127,
192,
204,
216,
238,
248,
258
],
"human": [
27
],
"health,": [
30
],
"as": [
31,
33
],
"well": [
32
],
"conservation": [
35
],
"ecologically": [
37
],
"economically": [
39
],
"important": [
40
],
"wildlife.": [
41
],
"Genomics": [
42
],
"offers": [
43
],
"a": [
44,
76,
112,
189
],
"range": [
45
],
"suitable": [
47
],
"tools": [
48
],
"to": [
49,
79,
122
],
"meet": [
50
],
"these": [
51,
173,
233
],
"goals,": [
52
],
"with": [
53,
64,
86,
149,
227
],
"metagenomic": [
54,
73,
239
],
"sequencing": [
55,
74,
240
],
"facilitating": [
56
],
"whole": [
60
],
"microbial": [
61
],
"communities": [
62
],
"associated": [
63,
85,
148,
226
],
"endemic": [
67
],
"outbreaks.": [
69
],
"Here,": [
70
],
"we": [
71,
187,
211
],
"use": [
72
],
"case-control": [
77
],
"study": [
78
],
"identify": [
80
],
"microbes": [
81,
249
],
"lung": [
83
],
"tissue": [
84
],
"newly": [
87
],
"observed": [
88
],
"pneumonia-related": [
89
],
"fatalities": [
90,
257
],
"34": [
92
],
"white-tailed": [
93,
259
],
"deer": [
94
],
"(": [
95,
156
],
"Odocoileus": [
96
],
"virginianus": [
97
],
")": [
98
],
"Wisconsin,": [
100
],
"USA.": [
101
],
"We": [
102,
142
],
"identified": [
103
],
"20": [
104
],
"bacterial": [
105,
146,
193
],
"species": [
106,
147,
174,
194
],
"that": [
107,
221
],
"occurred": [
108
],
"more": [
110
],
"than": [
111,
198
],
"single": [
113
],
"individual.": [
114
],
"Of": [
115
],
"these,": [
116
],
"only": [
117
],
"Clostridium": [
118
],
"novyi": [
119
],
"was": [
120,
138
],
"found": [
121
],
"substantially": [
123,
177
],
"differ": [
124,
178
],
"(in": [
125
],
"number": [
126,
191
],
"detections)": [
128
],
"between": [
129,
179
],
"case": [
130,
180,
196
],
"control": [
132,
182
],
"sample": [
133,
183
],
"groups;": [
134
],
"however,": [
135,
172
],
"this": [
136,
208,
230
],
"difference": [
137
],
"not": [
139,
176,
213,
224
],
"statistically": [
140
],
"significant.": [
141
],
"also": [
143
],
"detected": [
144,
188
],
"several": [
145
],
"pneumonia": [
150,
228
],
"and/or": [
151
],
"other": [
152
],
"diseases": [
153
],
"ruminants": [
155
],
"Mycoplasma": [
157
],
"ovipneumoniae": [
158
],
",": [
159,
162,
165,
168
],
"Trueperella": [
160
],
"pyogenes": [
161
],
"Pasteurella": [
163
],
"multocida": [
164
],
"Anaplasma": [
166
],
"phagocytophilum": [
167
],
"Fusobacterium": [
169
],
"necrophorum": [
170
],
");": [
171
],
"did": [
175,
212
],
"groups.": [
184
],
"On": [
185
],
"average,": [
186
],
"larger": [
190
],
"samples": [
197
],
"controls,": [
199
],
"supporting": [
200
],
"potential": [
202
],
"role": [
203
],
"polymicrobial": [
205
],
"infections": [
206
],
"system.": [
209,
231
],
"Importantly,": [
210
],
"detect": [
214
],
"DNA": [
215
],
"viruses": [
217
],
"or": [
218
],
"fungi,": [
219
],
"suggesting": [
220
],
"they": [
222
],
"significantly": [
225
],
"Together,": [
232
],
"results": [
234
],
"highlight": [
235
],
"utility": [
237
],
"identifying": [
242
],
"disease-associated": [
243
],
"microbes.": [
244
],
"This": [
245
],
"preliminary": [
246
],
"list": [
247
],
"will": [
250
],
"help": [
251
],
"inform": [
252
],
"future": [
253
],
"research": [
254
],
"pneumonia-associated": [
256
],
"deer.": [
260
]
},
"apc_list": {
"value": 1500,
"currency": "GBP",
"value_usd": 1839,
"provenance": "doaj"
},
"apc_paid": {
"value": 1500,
"currency": "GBP",
"value_usd": 1839,
"provenance": "doaj"
},
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5082076275",
"display_name": "Melanie B. Prentice",
"orcid": "https://orcid.org/0000-0003-1445-4719"
},
"institutions": [
{
"id": "https://openalex.org/I7947594",
"display_name": "University of Maine",
"ror": "https://ror.org/01adr0w49",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I2802397601",
"https://openalex.org/I7947594"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Melanie B. Prentice",
"raw_affiliation_strings": [
"School of Food and Agriculture, University of Maine, Maine, USA"
],
"affiliations": [
{
"raw_affiliation_string": "School of Food and Agriculture, University of Maine, Maine, USA",
"institution_ids": [
"https://openalex.org/I7947594"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5083067593",
"display_name": "Marie L. J. Gilbertson",
"orcid": "https://orcid.org/0000-0003-2142-0795"
},
"institutions": [
{
"id": "https://openalex.org/I135310074",
"display_name": "University of Wisconsin\u2013Madison",
"ror": "https://ror.org/01y2jtd41",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I135310074"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Marie L. J. Gilbertson",
"raw_affiliation_strings": [
"Wisconsin Cooperative Wildlife Research Unit, Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Wisconsin, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Wisconsin Cooperative Wildlife Research Unit, Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Wisconsin, USA",
"institution_ids": [
"https://openalex.org/I135310074"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5062585346",
"display_name": "Daniel J. Storm",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I2799428307",
"display_name": "Wisconsin Department of Natural Resources",
"ror": "https://ror.org/03nmkqc55",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I2799428307"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Daniel J. Storm",
"raw_affiliation_strings": [
"Wisconsin Department of Natural Resources, Wisconsin, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Wisconsin Department of Natural Resources, Wisconsin, USA",
"institution_ids": [
"https://openalex.org/I2799428307"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5014770974",
"display_name": "Wendy C. Turner",
"orcid": "https://orcid.org/0000-0002-0302-1646"
},
"institutions": [
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
},
{
"id": "https://openalex.org/I135310074",
"display_name": "University of Wisconsin\u2013Madison",
"ror": "https://ror.org/01y2jtd41",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I135310074"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Wendy C. Turner",
"raw_affiliation_strings": [
"U.S. Geological Survey, Wisconsin Cooperative Wildlife Research Unit, Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Wisconsin, USA"
],
"affiliations": [
{
"raw_affiliation_string": "U.S. Geological Survey, Wisconsin Cooperative Wildlife Research Unit, Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Wisconsin, USA",
"institution_ids": [
"https://openalex.org/I1286329397",
"https://openalex.org/I135310074"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5081470571",
"display_name": "Daniel P. Walsh",
"orcid": "https://orcid.org/0000-0002-7772-2445"
},
"institutions": [
{
"id": "https://openalex.org/I6750721",
"display_name": "University of Montana",
"ror": "https://ror.org/0078xmk34",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I6750721"
]
},
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Daniel P. Walsh",
"raw_affiliation_strings": [
"U.S. Geological Survey, Montana Cooperative Wildlife Research Unit, University of Montana, Montana, USA"
],
"affiliations": [
{
"raw_affiliation_string": "U.S. Geological Survey, Montana Cooperative Wildlife Research Unit, University of Montana, Montana, USA",
"institution_ids": [
"https://openalex.org/I6750721",
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5075358052",
"display_name": "Marie E. Pinkerton",
"orcid": "https://orcid.org/0000-0003-0151-9667"
},
"institutions": [
{
"id": "https://openalex.org/I135310074",
"display_name": "University of Wisconsin\u2013Madison",
"ror": "https://ror.org/01y2jtd41",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I135310074"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Marie E. Pinkerton",
"raw_affiliation_strings": [
"Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Wisconsin, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Wisconsin, USA",
"institution_ids": [
"https://openalex.org/I135310074"
]
}
]
},
{
"author_position": "last",
"author": {
"id": "https://openalex.org/A5053586810",
"display_name": "Pauline L. Kamath",
"orcid": "https://orcid.org/0000-0002-6458-4514"
},
"institutions": [
{
"id": "https://openalex.org/I7947594",
"display_name": "University of Maine",
"ror": "https://ror.org/01adr0w49",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I2802397601",
"https://openalex.org/I7947594"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Pauline L. Kamath",
"raw_affiliation_strings": [
"Maine Center for Genetics in the Environment, University of Maine, Orono, Maine, USA",
"School of Food and Agriculture, University of Maine, Maine, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Maine Center for Genetics in the Environment, University of Maine, Orono, Maine, USA",
"institution_ids": [
"https://openalex.org/I7947594"
]
},
{
"raw_affiliation_string": "School of Food and Agriculture, University of Maine, Maine, USA",
"institution_ids": []
}
]
}
],
"best_oa_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1099/mgen.0.001214",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4210186362",
"display_name": "Microbial Genomics",
"issn_l": "2057-5858",
"issn": [
"2057-5858"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310320497",
"host_organization_name": "Microbiology Society",
"host_organization_lineage": [
"https://openalex.org/P4310320497"
],
"host_organization_lineage_names": [
"Microbiology Society"
],
"type": "journal"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"biblio": {
"volume": "10",
"issue": "3",
"first_page": null,
"last_page": null
},
"citation_normalized_percentile": {
"value": 0.999328,
"is_in_top_1_percent": true,
"is_in_top_10_percent": true
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W4393220021",
"cited_by_count": 1,
"cited_by_percentile_year": {
"min": 88,
"max": 95
},
"concepts": [
{
"id": "https://openalex.org/C15151743",
"wikidata": "https://www.wikidata.org/wiki/Q903778",
"display_name": "Metagenomics",
"level": 3,
"score": 0.8566195
},
{
"id": "https://openalex.org/C86803240",
"wikidata": "https://www.wikidata.org/wiki/Q420",
"display_name": "Biology",
"level": 0,
"score": 0.83882225
},
{
"id": "https://openalex.org/C2775972322",
"wikidata": "https://www.wikidata.org/wiki/Q2334923",
"display_name": "Odocoileus",
"level": 2,
"score": 0.68151647
},
{
"id": "https://openalex.org/C116675565",
"wikidata": "https://www.wikidata.org/wiki/Q3241045",
"display_name": "Outbreak",
"level": 2,
"score": 0.58131236
},
{
"id": "https://openalex.org/C2776796551",
"wikidata": "https://www.wikidata.org/wiki/Q310656",
"display_name": "Pasteurella multocida",
"level": 3,
"score": 0.54774475
},
{
"id": "https://openalex.org/C2777914695",
"wikidata": "https://www.wikidata.org/wiki/Q12192",
"display_name": "Pneumonia",
"level": 2,
"score": 0.5119277
},
{
"id": "https://openalex.org/C29376679",
"wikidata": "https://www.wikidata.org/wiki/Q241741",
"display_name": "Wildlife",
"level": 2,
"score": 0.43828973
},
{
"id": "https://openalex.org/C2776460866",
"wikidata": "https://www.wikidata.org/wiki/Q170065",
"display_name": "Pathogen",
"level": 2,
"score": 0.41437897
},
{
"id": "https://openalex.org/C89423630",
"wikidata": "https://www.wikidata.org/wiki/Q7193",
"display_name": "Microbiology",
"level": 1,
"score": 0.38530487
},
{
"id": "https://openalex.org/C159047783",
"wikidata": "https://www.wikidata.org/wiki/Q7215",
"display_name": "Virology",
"level": 1,
"score": 0.3334632
},
{
"id": "https://openalex.org/C90856448",
"wikidata": "https://www.wikidata.org/wiki/Q431",
"display_name": "Zoology",
"level": 1,
"score": 0.26013592
},
{
"id": "https://openalex.org/C54355233",
"wikidata": "https://www.wikidata.org/wiki/Q7162",
"display_name": "Genetics",
"level": 1,
"score": 0.14913195
},
{
"id": "https://openalex.org/C18903297",
"wikidata": "https://www.wikidata.org/wiki/Q7150",
"display_name": "Ecology",
"level": 1,
"score": 0.14790568
},
{
"id": "https://openalex.org/C523546767",
"wikidata": "https://www.wikidata.org/wiki/Q10876",
"display_name": "Bacteria",
"level": 2,
"score": 0.13052112
},
{
"id": "https://openalex.org/C104317684",
"wikidata": "https://www.wikidata.org/wiki/Q7187",
"display_name": "Gene",
"level": 2,
"score": 0.09016889
},
{
"id": "https://openalex.org/C71924100",
"wikidata": "https://www.wikidata.org/wiki/Q11190",
"display_name": "Medicine",
"level": 0,
"score": 0.08669287
},
{
"id": "https://openalex.org/C126322002",
"wikidata": "https://www.wikidata.org/wiki/Q11180",
"display_name": "Internal medicine",
"level": 1,
"score": 0.0
}
],
"corresponding_author_ids": [],
"corresponding_institution_ids": [],
"countries_distinct_count": 1,
"counts_by_year": [
{
"year": 2024,
"cited_by_count": 1
}
],
"created_date": "2024-03-28",
"datasets": [],
"display_name": "Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus)",
"doi": "https://doi.org/10.1099/mgen.0.001214",
"fwci": 3.512,
"grants": [
{
"funder": "https://openalex.org/F4320309434",
"funder_display_name": "University of Wisconsin-Madison",
"award_id": "Federal Aid in Wildlife Restoration Act"
},
{
"funder": "https://openalex.org/F4320311568",
"funder_display_name": "Wisconsin Department of Natural Resources",
"award_id": "Federal Aid in Wildlife Restoration Act"
}
],
"has_fulltext": false,
"id": "https://openalex.org/W4393220021",
"ids": {
"openalex": "https://openalex.org/W4393220021",
"doi": "https://doi.org/10.1099/mgen.0.001214",
"pmid": "https://pubmed.ncbi.nlm.nih.gov/38536208"
},
"indexed_in": [
"crossref",
"pubmed"
],
"institutions_distinct_count": 5,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/odocoileus",
"display_name": "Odocoileus",
"score": 0.68151647
},
{
"id": "https://openalex.org/keywords/pathogenesis",
"display_name": "Pathogenesis",
"score": 0.453202
}
],
"language": "en",
"locations": [
{
"is_oa": true,
"landing_page_url": "https://doi.org/10.1099/mgen.0.001214",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4210186362",
"display_name": "Microbial Genomics",
"issn_l": "2057-5858",
"issn": [
"2057-5858"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310320497",
"host_organization_name": "Microbiology Society",
"host_organization_lineage": [
"https://openalex.org/P4310320497"
],
"host_organization_lineage_names": [
"Microbiology Society"
],
"type": "journal"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": false,
"landing_page_url": "https://pubmed.ncbi.nlm.nih.gov/38536208",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4306525036",
"display_name": "PubMed",
"issn_l": null,
"issn": null,
"is_oa": false,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1299303238",
"host_organization_name": "National Institutes of Health",
"host_organization_lineage": [
"https://openalex.org/I1299303238"
],
"host_organization_lineage_names": [
"National Institutes of Health"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
}
],
"locations_count": 2,
"mesh": [
{
"descriptor_ui": "D000818",
"descriptor_name": "Animals",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D000835",
"descriptor_name": "Animals, Wild",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D016022",
"descriptor_name": "Case-Control Studies",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D003670",
"descriptor_name": "Deer",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D006801",
"descriptor_name": "Humans",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D056186",
"descriptor_name": "Metagenomics",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D011014",
"descriptor_name": "Pneumonia",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
}
],
"ngrams_url": "https://api.openalex.org/works/W4393220021/ngrams",
"open_access": {
"is_oa": true,
"oa_status": "gold",
"oa_url": "https://doi.org/10.1099/mgen.0.001214",
"any_repository_has_fulltext": false
},
"primary_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1099/mgen.0.001214",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4210186362",
"display_name": "Microbial Genomics",
"issn_l": "2057-5858",
"issn": [
"2057-5858"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310320497",
"host_organization_name": "Microbiology Society",
"host_organization_lineage": [
"https://openalex.org/P4310320497"
],
"host_organization_lineage_names": [
"Microbiology Society"
],
"type": "journal"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"primary_topic": {
"id": "https://openalex.org/T11688",
"display_name": "Bacterial Pathogenesis in Animal and Human Health",
"score": 0.9999,
"subfield": {
"id": "https://openalex.org/subfields/2404",
"display_name": "Microbiology"
},
"field": {
"id": "https://openalex.org/fields/24",
"display_name": "Immunology and Microbiology"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
},
"publication_date": "2024-03-27",
"publication_year": 2024,
"referenced_works": [
"https://openalex.org/W1904546857",
"https://openalex.org/W1970015538",
"https://openalex.org/W2063363826",
"https://openalex.org/W2068193857",
"https://openalex.org/W2080810441",
"https://openalex.org/W2114117103",
"https://openalex.org/W2117533072",
"https://openalex.org/W2119045185",
"https://openalex.org/W2120129874",
"https://openalex.org/W2120977868",
"https://openalex.org/W2127435093",
"https://openalex.org/W2137953108",
"https://openalex.org/W2141436924",
"https://openalex.org/W2153182494",
"https://openalex.org/W2156945283",
"https://openalex.org/W2224510690",
"https://openalex.org/W2314432871",
"https://openalex.org/W2326571915",
"https://openalex.org/W2347701502",
"https://openalex.org/W2396849069",
"https://openalex.org/W2432815617",
"https://openalex.org/W2526857311",
"https://openalex.org/W2550586733",
"https://openalex.org/W2611595334",
"https://openalex.org/W2735337418",
"https://openalex.org/W2741824575",
"https://openalex.org/W2752913430",
"https://openalex.org/W2765752275",
"https://openalex.org/W2767318416",
"https://openalex.org/W2771582759",
"https://openalex.org/W2785093154",
"https://openalex.org/W2883984851",
"https://openalex.org/W2899735397",
"https://openalex.org/W2911126099",
"https://openalex.org/W2913575571",
"https://openalex.org/W2914844205",
"https://openalex.org/W2942826041",
"https://openalex.org/W2948523793",
"https://openalex.org/W2951860010",
"https://openalex.org/W2953594105",
"https://openalex.org/W2981997071",
"https://openalex.org/W2991385144",
"https://openalex.org/W2994843872",
"https://openalex.org/W3003540327",
"https://openalex.org/W3008888879",
"https://openalex.org/W3029397429",
"https://openalex.org/W3035831134",
"https://openalex.org/W3043703545",
"https://openalex.org/W3122308119",
"https://openalex.org/W3149525602",
"https://openalex.org/W3162926003",
"https://openalex.org/W3185446968",
"https://openalex.org/W3185521398",
"https://openalex.org/W3194864781",
"https://openalex.org/W4200539441",
"https://openalex.org/W4205480269",
"https://openalex.org/W4206898716",
"https://openalex.org/W4224236222",
"https://openalex.org/W4226000574",
"https://openalex.org/W4226132959",
"https://openalex.org/W4281700887",
"https://openalex.org/W4307431992",
"https://openalex.org/W4308769667",
"https://openalex.org/W4383534862",
"https://openalex.org/W4394666350"
],
"referenced_works_count": 65,
"related_works": [
"https://openalex.org/W87498267",
"https://openalex.org/W4391951385",
"https://openalex.org/W4391475568",
"https://openalex.org/W4251680011",
"https://openalex.org/W2883900106",
"https://openalex.org/W2796323285",
"https://openalex.org/W2132367172",
"https://openalex.org/W2011702141",
"https://openalex.org/W2007291512",
"https://openalex.org/W1605977297"
],
"sustainable_development_goals": [
{
"score": 0.78,
"id": "https://metadata.un.org/sdg/15",
"display_name": "Life on land"
}
],
"title": "Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus)",
"topics": [
{
"id": "https://openalex.org/T11688",
"display_name": "Bacterial Pathogenesis in Animal and Human Health",
"score": 0.9999,
"subfield": {
"id": "https://openalex.org/subfields/2404",
"display_name": "Microbiology"
},
"field": {
"id": "https://openalex.org/fields/24",
"display_name": "Immunology and Microbiology"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
},
{
"id": "https://openalex.org/T12047",
"display_name": "Viral Hemorrhagic Fevers and Zoonotic Infections",
"score": 0.997,
"subfield": {
"id": "https://openalex.org/subfields/2725",
"display_name": "Infectious Diseases"
},
"field": {
"id": "https://openalex.org/fields/27",
"display_name": "Medicine"
},
"domain": {
"id": "https://openalex.org/domains/4",
"display_name": "Health Sciences"
}
},
{
"id": "https://openalex.org/T11780",
"display_name": "Rabies Virus Transmission and Control",
"score": 0.9967,
"subfield": {
"id": "https://openalex.org/subfields/2406",
"display_name": "Virology"
},
"field": {
"id": "https://openalex.org/fields/24",
"display_name": "Immunology and Microbiology"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-10T07:38:45.036530",
"versions": []
}
}
