{
"USGS Publications Warehouse": {
"@context": "https://schema.org",
"@type": "Article",
"additionalType": "Journal Article",
"name": "Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer",
"identifier": [
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse IndexID",
"value": "70037368",
"url": "https://pubs.usgs.gov/publication/70037368"
},
{
"@type": "PropertyValue",
"propertyID": "USGS Publications Warehouse Internal ID",
"value": 70037368
},
{
"@type": "PropertyValue",
"propertyID": "DOI",
"value": "10.1186/1741-7007-7-78",
"url": "https://doi.org/10.1186/1741-7007-7-78"
},
{
"@type": "PropertyValue",
"propertyID": "ISSN",
"value": "17417007"
}
],
"journal": {
"@type": "Periodical",
"name": "BMC Biology",
"volumeNumber": "7",
"issueNumber": null
},
"inLanguage": "en",
"isPartOf": [
{
"@type": "CreativeWorkSeries",
"name": "BMC Biology"
}
],
"datePublished": "2009",
"dateModified": "2012-03-12",
"abstract": "Background: Phylogeographic reconstruction of some bacterial populations is hindered by low diversity coupled with high levels of lateral gene transfer. A comparison of recombination levels and diversity at seven housekeeping genes for eleven bacterial species, most of which are commonly cited as having high levels of lateral gene transfer shows that the relative contributions of homologous recombination versus mutation for Burkholderia pseudomallei is over two times higher than for Streptococcus pneumoniae and is thus the highest value yet reported in bacteria. Despite the potential for homologous recombination to increase diversity, B. pseudomallei exhibits a relative lack of diversity at these loci. In these situations, whole genome genotyping of orthologous shared single nucleotide polymorphism loci, discovered using next generation sequencing technologies, can provide very large data sets capable of estimating core phylogenetic relationships. We compared and searched 43 whole genome sequences of B. pseudomallei and its closest relatives for single nucleotide polymorphisms in orthologous shared regions to use in phylogenetic reconstruction. Results: Bayesian phylogenetic analyses of >14,000 single nucleotide polymorphisms yielded completely resolved trees for these 43 strains with high levels of statistical support. These results enable a better understanding of a separate analysis of population differentiation among >1,700 B. pseudomallei isolates as defined by sequence data from seven housekeeping genes. We analyzed this larger data set for population structure and allele sharing that can be attributed to lateral gene transfer. Our results suggest that despite an almost panmictic population, we can detect two distinct populations of B. pseudomallei that conform to biogeographic patterns found in many plant and animal species. That is, separation along Wallace's Line, a biogeographic boundary between Southeast Asia and Australia. Conclusion: We describe an Australian origin for B. pseudomallei, characterized by a single introduction event into Southeast Asia during a recent glacial period, and variable levels of lateral gene transfer within populations. These patterns provide insights into mechanisms of genetic diversification in B. pseudomallei and its closest relatives, and provide a framework for integrating the traditionally separate fields of population genetics and phylogenetics for other bacterial species with high levels of lateral gene transfer. ?? 2009 Pearson et al; licensee BioMed Central Ltd.",
"publisher": {
"@type": "Organization",
"name": "U.S. Geological Survey"
},
"author": [
{
"@type": "Person",
"name": "Robison, R.A.",
"givenName": "R.A.",
"familyName": "Robison"
},
{
"@type": "Person",
"name": "Giffard, P.",
"givenName": "P.",
"familyName": "Giffard"
},
{
"@type": "Person",
"name": "Currie, B.J.",
"givenName": "B.J.",
"familyName": "Currie"
},
{
"@type": "Person",
"name": "Beckstrom-Sternberg, S.",
"givenName": "S.",
"familyName": "Beckstrom-Sternberg"
},
{
"@type": "Person",
"name": "Price, E.P.",
"givenName": "E.P.",
"familyName": "Price"
},
{
"@type": "Person",
"name": "Pearson, T.",
"givenName": "T.",
"familyName": "Pearson"
},
{
"@type": "Person",
"name": "Brettin, T.S.",
"givenName": "T.S.",
"familyName": "Brettin"
},
{
"@type": "Person",
"name": "Mayo, M.",
"givenName": "M.",
"familyName": "Mayo"
},
{
"@type": "Person",
"name": "Chang, J.",
"givenName": "J.",
"familyName": "Chang"
},
{
"@type": "Person",
"name": "Tan, P.",
"givenName": "P.",
"familyName": "Tan"
},
{
"@type": "Person",
"name": "Wagner, D.M.",
"givenName": "D.M.",
"familyName": "Wagner"
},
{
"@type": "Person",
"name": "Kaul, R.",
"givenName": "R.",
"familyName": "Kaul"
},
{
"@type": "Person",
"name": "Glass, M.B.",
"givenName": "M.B.",
"familyName": "Glass"
},
{
"@type": "Person",
"name": "Beckstrom-Sternberg, J. S.",
"givenName": "J. S.",
"familyName": "Beckstrom-Sternberg"
},
{
"@type": "Person",
"name": "Gee, J.E.",
"givenName": "J.E.",
"familyName": "Gee"
},
{
"@type": "Person",
"name": "Tuanyok, A.",
"givenName": "A.",
"familyName": "Tuanyok"
},
{
"@type": "Person",
"name": "Sim, S.H.",
"givenName": "S.H.",
"familyName": "Sim"
},
{
"@type": "Person",
"name": "Leadem, B.",
"givenName": "B.",
"familyName": "Leadem"
},
{
"@type": "Person",
"name": "Pearson, O.",
"givenName": "O.",
"familyName": "Pearson"
},
{
"@type": "Person",
"name": "Allan, G.J.",
"givenName": "G.J.",
"familyName": "Allan"
},
{
"@type": "Person",
"name": "Hornstra, H.",
"givenName": "H.",
"familyName": "Hornstra"
},
{
"@type": "Person",
"name": "Hoffmaster, A.R.",
"givenName": "A.R.",
"familyName": "Hoffmaster"
},
{
"@type": "Person",
"name": "Okinaka, R.T.",
"givenName": "R.T.",
"familyName": "Okinaka"
},
{
"@type": "Person",
"name": "Foster, J.T.",
"givenName": "J.T.",
"familyName": "Foster"
},
{
"@type": "Person",
"name": "Auerbach, R.",
"givenName": "R.",
"familyName": "Auerbach"
},
{
"@type": "Person",
"name": "Wu, Z.",
"givenName": "Z.",
"familyName": "Wu"
},
{
"@type": "Person",
"name": "Keim, P.",
"givenName": "P.",
"familyName": "Keim"
}
]
},
"OpenAlex": {
"_id": "https://openalex.org/W2147626311",
"abstract_inverted_index": {
"Phylogeographic": [
0
],
"reconstruction": [
1
],
"of": [
2,
15,
21,
35,
44,
53,
95,
106,
126,
139,
161,
177,
186,
190,
242,
295,
307,
327,
339
],
"some": [
3
],
"bacterial": [
4,
32,
334
],
"populations": [
5,
241
],
"is": [
6,
61,
71
],
"hindered": [
7
],
"by": [
8,
200,
279
],
"low": [
9
],
"diversity": [
10,
25,
96
],
"coupled": [
11
],
"with": [
12,
174,
336
],
"high": [
13,
42,
175,
337
],
"levels": [
14,
23,
43,
176,
294,
338
],
"lateral": [
16,
45,
224,
296,
340
],
"gene": [
17,
46,
225,
297,
341
],
"transfer.": [
18,
226,
342
],
"A": [
19
],
"comparison": [
20
],
"recombination": [
22,
55,
85
],
"and": [
24,
70,
133,
142,
216,
254,
269,
292,
313,
317,
330
],
"at": [
26,
97
],
"seven": [
27,
204
],
"housekeeping": [
28,
205
],
"genes": [
29
],
"for": [
30,
58,
67,
83,
146,
170,
213,
275,
321,
332
],
"eleven": [
31
],
"species,": [
33
],
"most": [
34
],
"which": [
36
],
"are": [
37
],
"commonly": [
38
],
"cited": [
39
],
"as": [
40,
198
],
"having": [
41
],
"transfer": [
47,
298
],
"shows": [
48
],
"that": [
49,
219,
230,
245
],
"the": [
50,
73,
81,
323
],
"relative": [
51,
93
],
"contributions": [
52
],
"homologous": [
54,
84
],
"versus": [
56
],
"mutation": [
57
],
"Burkholderia": [
59
],
"pseudomallei": [
60,
90,
141,
196,
244,
312
],
"over": [
62
],
"two": [
63,
239
],
"times": [
64
],
"higher": [
65
],
"than": [
66
],
"Streptococcus": [
68
],
"pneumoniae": [
69
],
"thus": [
72
],
"highest": [
74
],
"value": [
75
],
"yet": [
76
],
"reported": [
77
],
"in": [
78,
150,
156,
251,
310
],
"bacteria.": [
79
],
"Despite": [
80
],
"potential": [
82
],
"to": [
86,
154,
223,
247
],
"increase": [
87
],
"diversity,": [
88
],
"B.": [
89,
140,
195,
243,
276,
311
],
"exhibits": [
91
],
"a": [
92,
183,
187,
263,
280,
288,
319
],
"lack": [
94
],
"these": [
98,
101,
171
],
"loci.": [
99
],
"In": [
100
],
"situations,": [
102
],
"whole": [
103,
136
],
"genome": [
104,
137
],
"genotyping": [
105
],
"orthologous": [
107,
151
],
"shared": [
108,
152
],
"single": [
109,
147,
163,
281
],
"nucleotide": [
110,
148,
164
],
"polymorphism": [
111
],
"loci,": [
112
],
"discovered": [
113
],
"using": [
114
],
"next": [
115
],
"generation": [
116
],
"sequencing": [
117
],
"technologies,": [
118
],
"can": [
119,
220,
237
],
"provide": [
120,
303,
318
],
"very": [
121
],
"large": [
122
],
"data": [
123,
202,
211
],
"sets": [
124
],
"capable": [
125
],
"estimating": [
127
],
"core": [
128
],
"phylogenetic": [
129,
157,
159
],
"relationships.": [
130
],
"We": [
131,
207
],
"compared": [
132
],
"searched": [
134
],
"43": [
135,
172
],
"sequences": [
138
],
"its": [
143,
314
],
"closest": [
144,
315
],
"relatives": [
145
],
"polymorphisms": [
149,
165
],
"regions": [
153
],
"use": [
155
],
"reconstruction.Bayesian": [
158
],
"analyses": [
160
],
">14,000": [
162
],
"yielded": [
166
],
"completely": [
167
],
"resolved": [
168
],
"trees": [
169
],
"strains": [
173
],
"statistical": [
178
],
"support.": [
179
],
"These": [
180,
301
],
"results": [
181,
228
],
"enable": [
182
],
"better": [
184
],
"understanding": [
185
],
"separate": [
188,
325
],
"analysis": [
189
],
"population": [
191,
214,
328
],
"differentiation": [
192
],
"among": [
193
],
">1,700": [
194
],
"isolates": [
197
],
"defined": [
199
],
"sequence": [
201
],
"from": [
203
],
"genes.": [
206
],
"analyzed": [
208
],
"this": [
209
],
"larger": [
210
],
"set": [
212
],
"structure": [
215
],
"allele": [
217
],
"sharing": [
218
],
"be": [
221
],
"attributed": [
222
],
"Our": [
227
],
"suggest": [
229
],
"despite": [
231
],
"an": [
232,
272
],
"almost": [
233
],
"panmictic": [
234
],
"population,": [
235
],
"we": [
236
],
"detect": [
238
],
"distinct": [
240
],
"conform": [
246
],
"biogeographic": [
248,
264
],
"patterns": [
249,
302
],
"found": [
250
],
"many": [
252
],
"plant": [
253
],
"animal": [
255
],
"species.": [
256
],
"That": [
257
],
"is,": [
258
],
"separation": [
259
],
"along": [
260
],
"Wallace's": [
261
],
"Line,": [
262
],
"boundary": [
265
],
"between": [
266
],
"Southeast": [
267,
285
],
"Asia": [
268,
286
],
"Australia.We": [
270
],
"describe": [
271
],
"Australian": [
273
],
"origin": [
274
],
"pseudomallei,": [
277
],
"characterized": [
278
],
"introduction": [
282
],
"event": [
283
],
"into": [
284,
305
],
"during": [
287
],
"recent": [
289
],
"glacial": [
290
],
"period,": [
291
],
"variable": [
293
],
"within": [
299
],
"populations.": [
300
],
"insights": [
304
],
"mechanisms": [
306
],
"genetic": [
308
],
"diversification": [
309
],
"relatives,": [
316
],
"framework": [
320
],
"integrating": [
322
],
"traditionally": [
324
],
"fields": [
326
],
"genetics": [
329
],
"phylogenetics": [
331
],
"other": [
333
],
"species": [
335
]
},
"apc_list": {
"value": 2290,
"currency": "GBP",
"value_usd": 2808,
"provenance": "doaj"
},
"apc_paid": {
"value": 2290,
"currency": "GBP",
"value_usd": 2808,
"provenance": "doaj"
},
"authorships": [
{
"author_position": "first",
"author": {
"id": "https://openalex.org/A5019273406",
"display_name": "Talima Pearson",
"orcid": "https://orcid.org/0000-0003-3696-041X"
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Talima Pearson",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5049561419",
"display_name": "Philip M. Giffard",
"orcid": "https://orcid.org/0000-0002-3030-9127"
},
"institutions": [
{
"id": "https://openalex.org/I160993911",
"display_name": "Queensland University of Technology",
"ror": "https://ror.org/03pnv4752",
"country_code": "AU",
"type": "education",
"lineage": [
"https://openalex.org/I160993911"
]
}
],
"countries": [
"AU"
],
"is_corresponding": false,
"raw_author_name": "Philip Giffard",
"raw_affiliation_strings": [
"Institute of Health and Biomedical Innovation, Queensland University of Technology, Kelvin Grove, Australia"
],
"affiliations": [
{
"raw_affiliation_string": "Institute of Health and Biomedical Innovation, Queensland University of Technology, Kelvin Grove, Australia",
"institution_ids": [
"https://openalex.org/I160993911"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5007799793",
"display_name": "Stephen M. Beckstrom\u2010Sternberg",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Stephen Beckstrom-Sternberg",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5029671456",
"display_name": "Raymond K. Auerbach",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Raymond Auerbach",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5043900137",
"display_name": "Heidie Hornstra",
"orcid": "https://orcid.org/0000-0002-0988-0548"
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Heidie Hornstra",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5033417581",
"display_name": "Apichai Tuanyok",
"orcid": "https://orcid.org/0000-0002-3380-0448"
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Apichai Tuanyok",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5033714830",
"display_name": "Erin P. Price",
"orcid": "https://orcid.org/0000-0002-1079-4882"
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Erin P Price",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5057311411",
"display_name": "Mindy B. Glass",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I4210121439",
"display_name": "National Center for Emerging and Zoonotic Infectious Diseases",
"ror": "https://ror.org/02ggwpx62",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1289490764",
"https://openalex.org/I1299022934",
"https://openalex.org/I4210109567",
"https://openalex.org/I4210121439"
]
},
{
"id": "https://openalex.org/I1289490764",
"display_name": "Centers for Disease Control and Prevention",
"ror": "https://ror.org/042twtr12",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1289490764",
"https://openalex.org/I1299022934"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Mindy B Glass",
"raw_affiliation_strings": [
"Bacterial Zoonoses Branch, Division of Foodborne, Bacterial, and Mycotic Diseases, National Center for Zoonotic, Vector-Borne, and Enteric Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Bacterial Zoonoses Branch, Division of Foodborne, Bacterial, and Mycotic Diseases, National Center for Zoonotic, Vector-Borne, and Enteric Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA",
"institution_ids": [
"https://openalex.org/I4210121439",
"https://openalex.org/I1289490764"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5076133908",
"display_name": "Benjamin R. Leadem",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Benjamin Leadem",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5050357682",
"display_name": "James S. Beckstrom\u2010Sternberg",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I1284308235",
"display_name": "Translational Genomics Research Institute",
"ror": "https://ror.org/02hfpnk21",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1284308235"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "James S Beckstrom-Sternberg",
"raw_affiliation_strings": [
"Pathogen Genomics Division, Translational Genomics Research Institute, Phoenix, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Pathogen Genomics Division, Translational Genomics Research Institute, Phoenix, Arizona, USA",
"institution_ids": [
"https://openalex.org/I1284308235"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5091510707",
"display_name": "Gerard J. Allan",
"orcid": "https://orcid.org/0000-0002-8007-4784"
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Gerard J Allan",
"raw_affiliation_strings": [
"Northern Arizona University, Department of Biological Sciences, Environmental Genetics & Genomics Facility, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Northern Arizona University, Department of Biological Sciences, Environmental Genetics & Genomics Facility, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5052291920",
"display_name": "Jeffrey T. Foster",
"orcid": "https://orcid.org/0000-0001-8235-8564"
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Jeffrey T Foster",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5080099109",
"display_name": "David M. Wagner",
"orcid": "https://orcid.org/0000-0003-2684-6007"
},
"institutions": [
{
"id": "https://openalex.org/I203172682",
"display_name": "Northern Arizona University",
"ror": "https://ror.org/0272j5188",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I203172682"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "David M Wagner",
"raw_affiliation_strings": [
"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA",
"institution_ids": [
"https://openalex.org/I203172682"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5064614258",
"display_name": "Richard T. Okinaka",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I1343871089",
"display_name": "Los Alamos National Laboratory",
"ror": "https://ror.org/01e41cf67",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1330989302",
"https://openalex.org/I1343871089",
"https://openalex.org/I198811213",
"https://openalex.org/I4210120050"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Richard T Okinaka",
"raw_affiliation_strings": [
"Biosciences, Los Alamos National Laboratory, Los Alamos, New Mexico, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Biosciences, Los Alamos National Laboratory, Los Alamos, New Mexico, USA",
"institution_ids": [
"https://openalex.org/I1343871089"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5011087409",
"display_name": "Siew Hoon Sim",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I1325159990",
"display_name": "Ministry of Defence",
"ror": "https://ror.org/05m38qe70",
"country_code": "SG",
"type": "government",
"lineage": [
"https://openalex.org/I1325159990"
]
}
],
"countries": [
"SG"
],
"is_corresponding": false,
"raw_author_name": "Siew Hoon Sim",
"raw_affiliation_strings": [
"Defense Medical and Environmental Research Institute, Singapore, Republic of Singapore"
],
"affiliations": [
{
"raw_affiliation_string": "Defense Medical and Environmental Research Institute, Singapore, Republic of Singapore",
"institution_ids": [
"https://openalex.org/I1325159990"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5090880213",
"display_name": "Ofori N. Pearson",
"orcid": "https://orcid.org/0000-0002-9550-1128"
},
"institutions": [
{
"id": "https://openalex.org/I2800772125",
"display_name": "Denver Federal Center",
"ror": "https://ror.org/05pxjag90",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1280600231",
"https://openalex.org/I2800772125"
]
},
{
"id": "https://openalex.org/I1286329397",
"display_name": "United States Geological Survey",
"ror": "https://ror.org/035a68863",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1286329397",
"https://openalex.org/I1335927249"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Ofori Pearson",
"raw_affiliation_strings": [
"US Geological Survey, Denver Federal Center, MS 939, Denver, Colorado, USA"
],
"affiliations": [
{
"raw_affiliation_string": "US Geological Survey, Denver Federal Center, MS 939, Denver, Colorado, USA",
"institution_ids": [
"https://openalex.org/I2800772125",
"https://openalex.org/I1286329397"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5005271241",
"display_name": "Zaining Wu",
"orcid": null
},
"institutions": [
{
"id": "https://openalex.org/I2801852214",
"display_name": "University of Washington Medical Center",
"ror": "https://ror.org/00wbzw723",
"country_code": "US",
"type": "healthcare",
"lineage": [
"https://openalex.org/I2801852214"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Zaining Wu",
"raw_affiliation_strings": [
"University of Washington Genome Center and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, USA"
],
"affiliations": [
{
"raw_affiliation_string": "University of Washington Genome Center and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, USA",
"institution_ids": [
"https://openalex.org/I2801852214"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5014163223",
"display_name": "Jean Chang",
"orcid": "https://orcid.org/0000-0002-1268-2251"
},
"institutions": [
{
"id": "https://openalex.org/I2801852214",
"display_name": "University of Washington Medical Center",
"ror": "https://ror.org/00wbzw723",
"country_code": "US",
"type": "healthcare",
"lineage": [
"https://openalex.org/I2801852214"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Jean Chang",
"raw_affiliation_strings": [
"University of Washington Genome Center and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, USA"
],
"affiliations": [
{
"raw_affiliation_string": "University of Washington Genome Center and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, USA",
"institution_ids": [
"https://openalex.org/I2801852214"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5015455225",
"display_name": "Rajinder Kaul",
"orcid": "https://orcid.org/0000-0002-7895-9284"
},
"institutions": [
{
"id": "https://openalex.org/I2801852214",
"display_name": "University of Washington Medical Center",
"ror": "https://ror.org/00wbzw723",
"country_code": "US",
"type": "healthcare",
"lineage": [
"https://openalex.org/I2801852214"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Rajinder Kaul",
"raw_affiliation_strings": [
"University of Washington Genome Center and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, USA"
],
"affiliations": [
{
"raw_affiliation_string": "University of Washington Genome Center and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, USA",
"institution_ids": [
"https://openalex.org/I2801852214"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5044052629",
"display_name": "Alex R. Hoffmaster",
"orcid": "https://orcid.org/0000-0002-7696-9219"
},
"institutions": [
{
"id": "https://openalex.org/I4210121439",
"display_name": "National Center for Emerging and Zoonotic Infectious Diseases",
"ror": "https://ror.org/02ggwpx62",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1289490764",
"https://openalex.org/I1299022934",
"https://openalex.org/I4210109567",
"https://openalex.org/I4210121439"
]
},
{
"id": "https://openalex.org/I1289490764",
"display_name": "Centers for Disease Control and Prevention",
"ror": "https://ror.org/042twtr12",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1289490764",
"https://openalex.org/I1299022934"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Alex R Hoffmaster",
"raw_affiliation_strings": [
"Bacterial Zoonoses Branch, Division of Foodborne, Bacterial, and Mycotic Diseases, National Center for Zoonotic, Vector-Borne, and Enteric Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Bacterial Zoonoses Branch, Division of Foodborne, Bacterial, and Mycotic Diseases, National Center for Zoonotic, Vector-Borne, and Enteric Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA",
"institution_ids": [
"https://openalex.org/I4210121439",
"https://openalex.org/I1289490764"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5046675967",
"display_name": "Thomas Brettin",
"orcid": "https://orcid.org/0000-0001-9301-9760"
},
"institutions": [
{
"id": "https://openalex.org/I196679689",
"display_name": "Joint Genome Institute",
"ror": "https://ror.org/04xm1d337",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1330989302",
"https://openalex.org/I148283060",
"https://openalex.org/I196679689",
"https://openalex.org/I39565521"
]
},
{
"id": "https://openalex.org/I1343871089",
"display_name": "Los Alamos National Laboratory",
"ror": "https://ror.org/01e41cf67",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1330989302",
"https://openalex.org/I1343871089",
"https://openalex.org/I198811213",
"https://openalex.org/I4210120050"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Thomas S Brettin",
"raw_affiliation_strings": [
"DOE Joint Genome Institute, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA"
],
"affiliations": [
{
"raw_affiliation_string": "DOE Joint Genome Institute, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA",
"institution_ids": [
"https://openalex.org/I196679689",
"https://openalex.org/I1343871089"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5081977566",
"display_name": "Richard A. Robison",
"orcid": "https://orcid.org/0000-0002-4324-5169"
},
"institutions": [
{
"id": "https://openalex.org/I100005738",
"display_name": "Brigham Young University",
"ror": "https://ror.org/047rhhm47",
"country_code": "US",
"type": "education",
"lineage": [
"https://openalex.org/I100005738"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Richard A Robison",
"raw_affiliation_strings": [
"Department of Microbiology & Molecular Biology, Brigham Young University, Provo, UT, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Department of Microbiology & Molecular Biology, Brigham Young University, Provo, UT, USA",
"institution_ids": [
"https://openalex.org/I100005738"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5018674620",
"display_name": "Mark Mayo",
"orcid": "https://orcid.org/0000-0002-9413-0142"
},
"institutions": [
{
"id": "https://openalex.org/I160993911",
"display_name": "Queensland University of Technology",
"ror": "https://ror.org/03pnv4752",
"country_code": "AU",
"type": "education",
"lineage": [
"https://openalex.org/I160993911"
]
}
],
"countries": [
"AU"
],
"is_corresponding": false,
"raw_author_name": "Mark Mayo",
"raw_affiliation_strings": [
"Institute of Health and Biomedical Innovation, Queensland University of Technology, Kelvin Grove, Australia"
],
"affiliations": [
{
"raw_affiliation_string": "Institute of Health and Biomedical Innovation, Queensland University of Technology, Kelvin Grove, Australia",
"institution_ids": [
"https://openalex.org/I160993911"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5029412468",
"display_name": "Jay E. Gee",
"orcid": "https://orcid.org/0000-0003-4308-1659"
},
"institutions": [
{
"id": "https://openalex.org/I4210121439",
"display_name": "National Center for Emerging and Zoonotic Infectious Diseases",
"ror": "https://ror.org/02ggwpx62",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1289490764",
"https://openalex.org/I1299022934",
"https://openalex.org/I4210109567",
"https://openalex.org/I4210121439"
]
},
{
"id": "https://openalex.org/I1289490764",
"display_name": "Centers for Disease Control and Prevention",
"ror": "https://ror.org/042twtr12",
"country_code": "US",
"type": "government",
"lineage": [
"https://openalex.org/I1289490764",
"https://openalex.org/I1299022934"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Jay E Gee",
"raw_affiliation_strings": [
"Bacterial Zoonoses Branch, Division of Foodborne, Bacterial, and Mycotic Diseases, National Center for Zoonotic, Vector-Borne, and Enteric Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Bacterial Zoonoses Branch, Division of Foodborne, Bacterial, and Mycotic Diseases, National Center for Zoonotic, Vector-Borne, and Enteric Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA",
"institution_ids": [
"https://openalex.org/I4210121439",
"https://openalex.org/I1289490764"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5003742732",
"display_name": "Patrick Tan",
"orcid": "https://orcid.org/0000-0002-0179-8048"
},
"institutions": [
{
"id": "https://openalex.org/I1325159990",
"display_name": "Ministry of Defence",
"ror": "https://ror.org/05m38qe70",
"country_code": "SG",
"type": "government",
"lineage": [
"https://openalex.org/I1325159990"
]
}
],
"countries": [
"SG"
],
"is_corresponding": false,
"raw_author_name": "Patrick Tan",
"raw_affiliation_strings": [
"Defense Medical and Environmental Research Institute, Singapore, Republic of Singapore"
],
"affiliations": [
{
"raw_affiliation_string": "Defense Medical and Environmental Research Institute, Singapore, Republic of Singapore",
"institution_ids": [
"https://openalex.org/I1325159990"
]
}
]
},
{
"author_position": "middle",
"author": {
"id": "https://openalex.org/A5069401929",
"display_name": "Bart J. Currie",
"orcid": "https://orcid.org/0000-0002-8878-8837"
},
"institutions": [
{
"id": "https://openalex.org/I4210137971",
"display_name": "Royal Darwin Hospital",
"ror": "https://ror.org/04jq72f57",
"country_code": "AU",
"type": "healthcare",
"lineage": [
"https://openalex.org/I4210137971"
]
}
],
"countries": [
"AU"
],
"is_corresponding": false,
"raw_author_name": "Bart J Currie",
"raw_affiliation_strings": [
"Northern Territory Clinical School, Royal Darwin Hospital, Darwin, Australia"
],
"affiliations": [
{
"raw_affiliation_string": "Northern Territory Clinical School, Royal Darwin Hospital, Darwin, Australia",
"institution_ids": [
"https://openalex.org/I4210137971"
]
}
]
},
{
"author_position": "last",
"author": {
"id": "https://openalex.org/A5045601734",
"display_name": "Paul Keim",
"orcid": "https://orcid.org/0000-0003-0089-5820"
},
"institutions": [
{
"id": "https://openalex.org/I1284308235",
"display_name": "Translational Genomics Research Institute",
"ror": "https://ror.org/02hfpnk21",
"country_code": "US",
"type": "facility",
"lineage": [
"https://openalex.org/I1284308235"
]
}
],
"countries": [
"US"
],
"is_corresponding": false,
"raw_author_name": "Paul Keim",
"raw_affiliation_strings": [
"Pathogen Genomics Division, Translational Genomics Research Institute, Phoenix, Arizona, USA"
],
"affiliations": [
{
"raw_affiliation_string": "Pathogen Genomics Division, Translational Genomics Research Institute, Phoenix, Arizona, USA",
"institution_ids": [
"https://openalex.org/I1284308235"
]
}
]
}
],
"best_oa_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1186/1741-7007-7-78",
"pdf_url": "https://bmcbiol.biomedcentral.com/counter/pdf/10.1186/1741-7007-7-78",
"source": {
"id": "https://openalex.org/S25903957",
"display_name": "BMC Biology",
"issn_l": "1741-7007",
"issn": [
"1741-7007"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310320256",
"host_organization_name": "BioMed Central",
"host_organization_lineage": [
"https://openalex.org/P4310319965",
"https://openalex.org/P4310320256"
],
"host_organization_lineage_names": [
"Springer Nature",
"BioMed Central"
],
"type": "journal"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"biblio": {
"volume": "7",
"issue": "1",
"first_page": null,
"last_page": null
},
"cited_by_api_url": "https://api.openalex.org/works?filter=cites:W2147626311",
"cited_by_count": 188,
"cited_by_percentile_year": {
"min": 98,
"max": 99
},
"concepts": [
{
"id": "https://openalex.org/c86803240",
"wikidata": "https://www.wikidata.org/wiki/Q420",
"display_name": "Biology",
"level": 0,
"score": 0.93968415,
"qid": "Q158998"
},
{
"id": "https://openalex.org/c54355233",
"wikidata": "https://www.wikidata.org/wiki/Q7162",
"display_name": "Genetics",
"level": 1,
"score": 0.7106263,
"qid": "Q158979"
},
{
"id": "https://openalex.org/c193252679",
"wikidata": "https://www.wikidata.org/wiki/Q242125",
"display_name": "Phylogenetic tree",
"level": 3,
"score": 0.59652543,
"qid": null
},
{
"id": "https://openalex.org/c92938381",
"wikidata": "https://www.wikidata.org/wiki/Q83185",
"display_name": "Horizontal gene transfer",
"level": 4,
"score": 0.5870998,
"qid": null
},
{
"id": "https://openalex.org/c26589402",
"wikidata": "https://www.wikidata.org/wiki/Q7068267",
"display_name": "Nucleotide diversity",
"level": 5,
"score": 0.54883593,
"qid": null
},
{
"id": "https://openalex.org/c33922130",
"wikidata": "https://www.wikidata.org/wiki/Q419232",
"display_name": "Housekeeping gene",
"level": 4,
"score": 0.51624393,
"qid": null
},
{
"id": "https://openalex.org/c2908647359",
"wikidata": "https://www.wikidata.org/wiki/Q2625603",
"display_name": "Population",
"level": 2,
"score": 0.488047,
"qid": null
},
{
"id": "https://openalex.org/c141231307",
"wikidata": "https://www.wikidata.org/wiki/Q7020",
"display_name": "Genome",
"level": 3,
"score": 0.48540553,
"qid": null
},
{
"id": "https://openalex.org/c90132467",
"wikidata": "https://www.wikidata.org/wiki/Q171184",
"display_name": "Phylogenetics",
"level": 3,
"score": 0.42230755,
"qid": null
},
{
"id": "https://openalex.org/c78458016",
"wikidata": "https://www.wikidata.org/wiki/Q840400",
"display_name": "Evolutionary biology",
"level": 1,
"score": 0.40400884,
"qid": "Q226241"
},
{
"id": "https://openalex.org/c104317684",
"wikidata": "https://www.wikidata.org/wiki/Q7187",
"display_name": "Gene",
"level": 2,
"score": 0.40029004,
"qid": null
},
{
"id": "https://openalex.org/c180754005",
"wikidata": "https://www.wikidata.org/wiki/Q80726",
"display_name": "Allele",
"level": 3,
"score": 0.2547984,
"qid": null
},
{
"id": "https://openalex.org/c197754878",
"wikidata": "https://www.wikidata.org/wiki/Q80711",
"display_name": "Haplotype",
"level": 4,
"score": 0.21353921,
"qid": null
},
{
"id": "https://openalex.org/c150194340",
"wikidata": "https://www.wikidata.org/wiki/Q26972",
"display_name": "Gene expression",
"level": 3,
"score": 0.0,
"qid": null
},
{
"id": "https://openalex.org/c149923435",
"wikidata": "https://www.wikidata.org/wiki/Q37732",
"display_name": "Demography",
"level": 1,
"score": 0.0,
"qid": "Q166262"
},
{
"id": "https://openalex.org/c144024400",
"wikidata": "https://www.wikidata.org/wiki/Q21201",
"display_name": "Sociology",
"level": 0,
"score": 0.0,
"qid": "Q226182"
}
],
"corresponding_author_ids": [],
"corresponding_institution_ids": [],
"countries_distinct_count": 3,
"counts_by_year": [
{
"year": 2024,
"cited_by_count": 7
},
{
"year": 2023,
"cited_by_count": 9
},
{
"year": 2022,
"cited_by_count": 7
},
{
"year": 2021,
"cited_by_count": 11
},
{
"year": 2020,
"cited_by_count": 11
},
{
"year": 2019,
"cited_by_count": 10
},
{
"year": 2018,
"cited_by_count": 9
},
{
"year": 2017,
"cited_by_count": 13
},
{
"year": 2016,
"cited_by_count": 19
},
{
"year": 2015,
"cited_by_count": 12
},
{
"year": 2014,
"cited_by_count": 11
},
{
"year": 2013,
"cited_by_count": 11
},
{
"year": 2012,
"cited_by_count": 13
}
],
"created_date": "2016-06-24",
"datasets": [],
"display_name": "Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer",
"doi": "https://doi.org/10.1186/1741-7007-7-78",
"fulltext_origin": "pdf",
"fwci": 8.462,
"grants": [],
"has_fulltext": true,
"id": "https://openalex.org/W2147626311",
"ids": {
"openalex": "https://openalex.org/W2147626311",
"doi": "https://doi.org/10.1186/1741-7007-7-78",
"mag": "2147626311",
"pmid": "https://pubmed.ncbi.nlm.nih.gov/19922616",
"pmcid": "https://www.ncbi.nlm.nih.gov/pmc/articles/2784454"
},
"indexed_in": [
"crossref",
"doaj",
"pubmed"
],
"institutions_distinct_count": 13,
"is_paratext": false,
"is_retracted": false,
"keywords": [
{
"id": "https://openalex.org/keywords/horizontal-gene-transfer",
"display_name": "Horizontal gene transfer",
"score": 0.5870998
},
{
"id": "https://openalex.org/keywords/nucleotide-diversity",
"display_name": "Nucleotide diversity",
"score": 0.54883593
},
{
"id": "https://openalex.org/keywords/housekeeping-gene",
"display_name": "Housekeeping gene",
"score": 0.51624393
},
{
"id": "https://openalex.org/keywords/genomic-plasticity",
"display_name": "Genomic Plasticity",
"score": 0.48195
}
],
"language": "en",
"locations": [
{
"is_oa": true,
"landing_page_url": "https://doi.org/10.1186/1741-7007-7-78",
"pdf_url": "https://bmcbiol.biomedcentral.com/counter/pdf/10.1186/1741-7007-7-78",
"source": {
"id": "https://openalex.org/S25903957",
"display_name": "BMC Biology",
"issn_l": "1741-7007",
"issn": [
"1741-7007"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310320256",
"host_organization_name": "BioMed Central",
"host_organization_lineage": [
"https://openalex.org/P4310319965",
"https://openalex.org/P4310320256"
],
"host_organization_lineage_names": [
"Springer Nature",
"BioMed Central"
],
"type": "journal"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": false,
"landing_page_url": "https://doaj.org/article/0193043a69914f9caa87a181e5b25855",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4306401280",
"display_name": "DOAJ (DOAJ: Directory of Open Access Journals)",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": null,
"host_organization_name": null,
"host_organization_lineage": [],
"host_organization_lineage_names": [],
"type": "repository"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
},
{
"is_oa": true,
"landing_page_url": "https://europepmc.org/articles/pmc2784454",
"pdf_url": "https://europepmc.org/articles/pmc2784454?pdf=render",
"source": {
"id": "https://openalex.org/S4306400806",
"display_name": "Europe PMC (PubMed Central)",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1303153112",
"host_organization_name": "European Bioinformatics Institute",
"host_organization_lineage": [
"https://openalex.org/I1303153112"
],
"host_organization_lineage_names": [
"European Bioinformatics Institute"
],
"type": "repository"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": true,
"landing_page_url": "https://eprints.qut.edu.au/42856/1/42856.pdf",
"pdf_url": "https://eprints.qut.edu.au/42856/1/42856.pdf",
"source": {
"id": "https://openalex.org/S4306402607",
"display_name": "QUT ePrints (Queensland University of Technology)",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I160993911",
"host_organization_name": "Queensland University of Technology",
"host_organization_lineage": [
"https://openalex.org/I160993911"
],
"host_organization_lineage_names": [
"Queensland University of Technology"
],
"type": "repository"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": true,
"landing_page_url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784454",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S2764455111",
"display_name": "PubMed Central",
"issn_l": null,
"issn": null,
"is_oa": true,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1299303238",
"host_organization_name": "National Institutes of Health",
"host_organization_lineage": [
"https://openalex.org/I1299303238"
],
"host_organization_lineage_names": [
"National Institutes of Health"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
{
"is_oa": false,
"landing_page_url": "https://pubmed.ncbi.nlm.nih.gov/19922616",
"pdf_url": null,
"source": {
"id": "https://openalex.org/S4306525036",
"display_name": "PubMed",
"issn_l": null,
"issn": null,
"is_oa": false,
"is_in_doaj": false,
"is_core": false,
"host_organization": "https://openalex.org/I1299303238",
"host_organization_name": "National Institutes of Health",
"host_organization_lineage": [
"https://openalex.org/I1299303238"
],
"host_organization_lineage_names": [
"National Institutes of Health"
],
"type": "repository"
},
"license": null,
"license_id": null,
"version": null,
"is_accepted": false,
"is_published": false
}
],
"locations_count": 6,
"mesh": [
{
"descriptor_ui": "D016957",
"descriptor_name": "Burkholderia pseudomallei",
"qualifier_ui": "Q000235",
"qualifier_name": "genetics",
"is_major_topic": true
},
{
"descriptor_ui": "D022761",
"descriptor_name": "Gene Transfer, Horizontal",
"qualifier_ui": "Q000502",
"qualifier_name": "physiology",
"is_major_topic": true
},
{
"descriptor_ui": "D005798",
"descriptor_name": "Genes, Bacterial",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": true
},
{
"descriptor_ui": "D005828",
"descriptor_name": "Genetics, Population",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": true
},
{
"descriptor_ui": "D001315",
"descriptor_name": "Australia",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D016957",
"descriptor_name": "Burkholderia pseudomallei",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D004269",
"descriptor_name": "DNA, Bacterial",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D004269",
"descriptor_name": "DNA, Bacterial",
"qualifier_ui": "Q000235",
"qualifier_name": "genetics",
"is_major_topic": false
},
{
"descriptor_ui": "D004269",
"descriptor_name": "DNA, Bacterial",
"qualifier_ui": "Q000737",
"qualifier_name": "chemistry",
"is_major_topic": false
},
{
"descriptor_ui": "D022761",
"descriptor_name": "Gene Transfer, Horizontal",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D016680",
"descriptor_name": "Genome, Bacterial",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D006801",
"descriptor_name": "Humans",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D017720",
"descriptor_name": "Molecular Epidemiology",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D010802",
"descriptor_name": "Phylogeny",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D020641",
"descriptor_name": "Polymorphism, Single Nucleotide",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D017422",
"descriptor_name": "Sequence Analysis, DNA",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
},
{
"descriptor_ui": "D017385",
"descriptor_name": "Sequence Homology",
"qualifier_ui": "",
"qualifier_name": null,
"is_major_topic": false
}
],
"ngrams_url": "https://api.openalex.org/works/W2147626311/ngrams",
"open_access": {
"is_oa": true,
"oa_status": "gold",
"oa_url": "https://bmcbiol.biomedcentral.com/counter/pdf/10.1186/1741-7007-7-78",
"any_repository_has_fulltext": true
},
"primary_location": {
"is_oa": true,
"landing_page_url": "https://doi.org/10.1186/1741-7007-7-78",
"pdf_url": "https://bmcbiol.biomedcentral.com/counter/pdf/10.1186/1741-7007-7-78",
"source": {
"id": "https://openalex.org/S25903957",
"display_name": "BMC Biology",
"issn_l": "1741-7007",
"issn": [
"1741-7007"
],
"is_oa": true,
"is_in_doaj": true,
"is_core": true,
"host_organization": "https://openalex.org/P4310320256",
"host_organization_name": "BioMed Central",
"host_organization_lineage": [
"https://openalex.org/P4310319965",
"https://openalex.org/P4310320256"
],
"host_organization_lineage_names": [
"Springer Nature",
"BioMed Central"
],
"type": "journal"
},
"license": "cc-by",
"license_id": "https://openalex.org/licenses/cc-by",
"version": "publishedVersion",
"is_accepted": true,
"is_published": true
},
"primary_topic": {
"id": "https://openalex.org/T12951",
"display_name": "Epidemiology, Pathogenesis, and Management of Melioidosis",
"score": 0.9997,
"subfield": {
"id": "https://openalex.org/subfields/2713",
"display_name": "Epidemiology"
},
"field": {
"id": "https://openalex.org/fields/27",
"display_name": "Medicine"
},
"domain": {
"id": "https://openalex.org/domains/4",
"display_name": "Health Sciences"
}
},
"publication_date": "2009-11-18",
"publication_year": 2009,
"referenced_works": [
"https://openalex.org/W1922405592",
"https://openalex.org/W1970404195",
"https://openalex.org/W1976047564",
"https://openalex.org/W1979152503",
"https://openalex.org/W1984702361",
"https://openalex.org/W1985041445",
"https://openalex.org/W1985544238",
"https://openalex.org/W1988182864",
"https://openalex.org/W1994516761",
"https://openalex.org/W2003665545",
"https://openalex.org/W2004444667",
"https://openalex.org/W2005100412",
"https://openalex.org/W2005212780",
"https://openalex.org/W2005773688",
"https://openalex.org/W2006790542",
"https://openalex.org/W2008144158",
"https://openalex.org/W2008338708",
"https://openalex.org/W2011847079",
"https://openalex.org/W2034399080",
"https://openalex.org/W2047346285",
"https://openalex.org/W2047550265",
"https://openalex.org/W2047832887",
"https://openalex.org/W2055298722",
"https://openalex.org/W2057076378",
"https://openalex.org/W2068225247",
"https://openalex.org/W2068365898",
"https://openalex.org/W2071426478",
"https://openalex.org/W2082324448",
"https://openalex.org/W2082928585",
"https://openalex.org/W2085296777",
"https://openalex.org/W2092343047",
"https://openalex.org/W2098126593",
"https://openalex.org/W2098558111",
"https://openalex.org/W2099935661",
"https://openalex.org/W2100102165",
"https://openalex.org/W2100410879",
"https://openalex.org/W2102714321",
"https://openalex.org/W2104332925",
"https://openalex.org/W2104349418",
"https://openalex.org/W2107233780",
"https://openalex.org/W2107282968",
"https://openalex.org/W2108018752",
"https://openalex.org/W2110397906",
"https://openalex.org/W2113567599",
"https://openalex.org/W2114363836",
"https://openalex.org/W2115301897",
"https://openalex.org/W2117737102",
"https://openalex.org/W2121456362",
"https://openalex.org/W2126078235",
"https://openalex.org/W2126087628",
"https://openalex.org/W2130623712",
"https://openalex.org/W2133435340",
"https://openalex.org/W2136145671",
"https://openalex.org/W2136314281",
"https://openalex.org/W2137782692",
"https://openalex.org/W2139809552",
"https://openalex.org/W2140360847",
"https://openalex.org/W2142503351",
"https://openalex.org/W2145240901",
"https://openalex.org/W2146058063",
"https://openalex.org/W2147190637",
"https://openalex.org/W2149615908",
"https://openalex.org/W2149652290",
"https://openalex.org/W2150815933",
"https://openalex.org/W2151371624",
"https://openalex.org/W2154091239",
"https://openalex.org/W2158685996",
"https://openalex.org/W2158715907",
"https://openalex.org/W2159138215",
"https://openalex.org/W2159266221",
"https://openalex.org/W2160831973",
"https://openalex.org/W2166491902",
"https://openalex.org/W2169175634",
"https://openalex.org/W2170093840",
"https://openalex.org/W2170205411",
"https://openalex.org/W4211084778",
"https://openalex.org/W4243074539",
"https://openalex.org/W4247332402",
"https://openalex.org/W4253415710"
],
"referenced_works_count": 79,
"related_works": [
"https://openalex.org/W2949296710",
"https://openalex.org/W2883025420",
"https://openalex.org/W2409815428",
"https://openalex.org/W2317816538",
"https://openalex.org/W2174809885",
"https://openalex.org/W2086569686",
"https://openalex.org/W2057191541",
"https://openalex.org/W2043760664",
"https://openalex.org/W2033409456",
"https://openalex.org/W1992658754"
],
"sustainable_development_goals": [
{
"id": "https://metadata.un.org/sdg/15",
"display_name": "Life on land",
"score": 0.56
}
],
"title": "Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer",
"topics": [
{
"id": "https://openalex.org/T12951",
"display_name": "Epidemiology, Pathogenesis, and Management of Melioidosis",
"score": 0.9997,
"subfield": {
"id": "https://openalex.org/subfields/2713",
"display_name": "Epidemiology"
},
"field": {
"id": "https://openalex.org/fields/27",
"display_name": "Medicine"
},
"domain": {
"id": "https://openalex.org/domains/4",
"display_name": "Health Sciences"
}
},
{
"id": "https://openalex.org/T11578",
"display_name": "Genomics and Pathogenicity of Plant Pathogenic Bacteria",
"score": 0.9953,
"subfield": {
"id": "https://openalex.org/subfields/1110",
"display_name": "Plant Science"
},
"field": {
"id": "https://openalex.org/fields/11",
"display_name": "Agricultural and Biological Sciences"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
},
{
"id": "https://openalex.org/T11470",
"display_name": "Symbiotic Nitrogen Fixation in Legumes",
"score": 0.9712,
"subfield": {
"id": "https://openalex.org/subfields/1110",
"display_name": "Plant Science"
},
"field": {
"id": "https://openalex.org/fields/11",
"display_name": "Agricultural and Biological Sciences"
},
"domain": {
"id": "https://openalex.org/domains/1",
"display_name": "Life Sciences"
}
}
],
"type": "article",
"type_crossref": "journal-article",
"updated_date": "2024-08-08T10:31:41.251690",
"versions": [],
"qid": null
}
}