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"USGS Publications Warehouse": { "@context": "https://schema.org", "@type": "Article", "additionalType": "Journal Article", "name": "Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications", "identifier": [ { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse IndexID", "value": "70252555", "url": "https://pubs.usgs.gov/publication/70252555" }, { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse Internal ID", "value": 70252555 }, { "@type": "PropertyValue", "propertyID": "DOI", "value": "10.1016/j.ympev.2024.108046", "url": "https://doi.org/10.1016/j.ympev.2024.108046" } ], "journal": { "@type": "Periodical", "name": "Molecular Phylogenetics and Evolution", "volumeNumber": "195", "issueNumber": null }, "inLanguage": "en", "isPartOf": [ { "@type": "CreativeWorkSeries", "name": "Molecular Phylogenetics and Evolution" } ], "datePublished": "2024", "dateModified": "2024-04-10", "abstract": "The global decline of freshwater mussels and their crucial ecological services highlight the need to understand their phylogeny, phylogeography and patterns of genetic diversity to guide conservation efforts. Such knowledge is urgently needed for\u00a0Unio crassus, a highly imperilled species originally widespread throughout Europe and southwest Asia. Recent studies have resurrected several species from synonymy based on mitochondrial data, revealing\u00a0U. crassus\u00a0to be a complex of cryptic species. To address long-standing taxonomic uncertainties hindering effective conservation, we integrate morphometric, phylogenetic, and phylogeographic analyses to examine species diversity within the\u00a0U. crassus\u00a0complex across its entire range. Phylogenetic analyses were performed using cytochrome c oxidase subunit I (815 specimens from 182 populations) and, for selected specimens, whole mitogenome sequences and Anchored Hybrid Enrichment (AHE) data on \u223c600 nuclear loci. Mito-nuclear discordance was detected, consistent with mitochondrial DNA gene flow between some species during the Pliocene and Pleistocene. Fossil-calibrated phylogenies based on AHE data support a Mediterranean origin for the\u00a0U. crassus\u00a0complex in the Early Miocene. The results of our integrative approach support 12 species in the group: the previously recognised\u00a0Unio bruguierianus,\u00a0Unio carneus, Unio crassus,\u00a0Unio damascensis,\u00a0Unio ionicus,\u00a0Unio sesirmensis, and\u00a0Unio tumidiformis, and the reinstatement of five nominal taxa:\u00a0Unio desectus\u00a0stat. rev.,\u00a0Unio gontierii\u00a0stat. rev.,\u00a0Unio mardinensis\u00a0stat. rev.,\u00a0Unio nanus\u00a0stat. rev., and\u00a0Unio vicarius\u00a0stat. rev.\u00a0Morphometric analyses of shell contours reveal important morphospace overlaps among these species, highlighting cryptic, but geographically structured, diversity. The distribution, taxonomy, phylogeography, and conservation of each species are succinctly described.", "description": "108046, 27 p.", "publisher": { "@type": "Organization", "name": "Elsevier" }, "author": [ { "@type": "Person", "name": "Lopes-Lima, Manuel ", "givenName": "Manuel ", "familyName": "Lopes-Lima" }, { "@type": "Person", "name": "Geist, Juergen", "givenName": "Juergen", "familyName": "Geist", "affiliation": [ { "@type": "Organization", "name": "Aquatic Systems Biology, Technical University of Munich, TUM School of Life Sciences" } ] }, { "@type": "Person", "name": "Egg, Sarah", "givenName": "Sarah", "familyName": "Egg", "affiliation": [ { "@type": "Organization", "name": "Aquatic Systems Biology, Technical University of Munich, TUM School of Life Sciences" } ] }, { "@type": "Person", "name": "Vikhrev, Ilya V.", "givenName": "Ilya V.", "familyName": "Vikhrev", "affiliation": [ { "@type": "Organization", "name": "Russian Academy of Sciences" } ] }, { "@type": "Person", "name": "Woschitz, G.", "givenName": "G.", "familyName": "Woschitz", "affiliation": [ { "@type": "Organization", "name": "IFIS - Ichthyological Research Initiative Styria" } ] }, { "@type": "Person", "name": "Beran, Lubo\u0161", "givenName": "Lubo\u0161", "familyName": "Beran", "affiliation": [ { "@type": "Organization", "name": "Regional Office Koko\u0159\u00ednsko \u2013 M\u00e1ch\u016fv kraj Protected Landscape Area Administration, Nature Conservation Agency of the Czech Republic" } ] }, { "@type": "Person", "name": "Bikashvili, Ani", "givenName": "Ani", "familyName": "Bikashvili", "affiliation": [ { "@type": "Organization", "name": "Institute of Zoology, Ilia State University" } ] }, { "@type": "Person", "name": "Johnson, Nathan", "givenName": "Nathan", "familyName": "Johnson", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0001-5167-1988", "url": "https://orcid.org/0000-0001-5167-1988" }, "affiliation": [ { "@type": "Organization", "name": "Wetland and Aquatic Research Center", "url": "https://www.usgs.gov/centers/wetland-and-aquatic-research-center" } ] }, { "@type": "Person", "name": "Karaouzas, Ioannis", "givenName": "Ioannis", "familyName": "Karaouzas", "affiliation": [ { "@type": "Organization", "name": "Hellenic Centre for Marine Research, Institute of Marine Biological Resources and Inland Waters" } ] }, { "@type": "Person", "name": "Kebap\u00e7\u0131, \u00dcmit", "givenName": "\u00dcmit", "familyName": "Kebap\u00e7\u0131", "affiliation": [ { "@type": "Organization", "name": "Burdur Mehmet Akif Ersoy University" } ] }, { "@type": "Person", "name": "Kondakov, Alexander V.", "givenName": "Alexander V.", "familyName": "Kondakov", "affiliation": [ { "@type": "Organization", "name": "Russian Academy of Sciences" } ] }, { "@type": "Person", "name": "Kuehn, Ralph", "givenName": "Ralph", "familyName": "Kuehn", "affiliation": [ { "@type": "Organization", "name": "Molecular Zoology, Technical University of Munich, TUM School of Life Sciences" } ] }, { "@type": "Person", "name": "Van Bocxlaer, Bert", "givenName": "Bert", "familyName": "Van Bocxlaer", "affiliation": [ { "@type": "Organization", "name": "CNRS, Univ. 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