ORCID:
'@context': http://schema.org '@id': https://orcid.org/0000-0002-7835-6571 '@reverse': creator: - '@id': https://doi.org/10.1111/eva.13511 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85143973895 - '@type': PropertyValue propertyID: doi value: 10.1111/eva.13511 name: Using landscape genomics to delineate future adaptive potential for climate change in the Yosemite toad (Anaxyrus canorus) - '@id': https://doi.org/10.1071/is21022_co '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85126589310 - '@type': PropertyValue propertyID: doi value: 10.1071/is21022_co name: "Erratum: Extensive species diversification and marked geographic phylogenetic\ \ structure in the Mesoamerican genus Stenopelmatus (Orthoptera: Stenopelmatidae:\ \ Stenopelmatinae) revealed by mitochondrial and nuclear 3RAD data (Invertebrate\ \ Systematics (2021) 36:1 (1\u201321) DOI: 10.1071/IS21022)" - '@id': https://doi.org/10.1071/is21022 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85126587947 - '@type': PropertyValue propertyID: doi value: 10.1071/is21022 name: 'Extensive species diversification and marked geographic phylogenetic structure in the Mesoamerican genus Stenopelmatus (Orthoptera: Stenopelmatidae: Stenopelmatinae) revealed by mitochondrial and nuclear 3RAD data' - '@id': https://doi.org/10.1038/s41437-022-00561-x '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85137564811 - '@type': PropertyValue propertyID: doi value: 10.1038/s41437-022-00561-x name: 'Landscape genetics of a sub-alpine toad: climate change predicted to induce upward range shifts via asymmetrical migration corridors' - '@id': https://doi.org/10.1111/csp2.12780 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85135448168 - '@type': PropertyValue propertyID: doi value: 10.1111/csp2.12780 name: Recent declines in genetic diversity with limited dispersal among coastal cactus wren populations in San Diego County, California - '@id': https://doi.org/10.1093/jhered/esac040 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85143059497 - '@type': PropertyValue propertyID: doi value: 10.1093/jhered/esac040 name: 'Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern' - '@id': https://doi.org/10.1111/eva.13429 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/eva.13429 - '@type': PropertyValue propertyID: eid value: 2-s2.0-85133070363 name: Subspecies differentiation and range-wide genetic structure are driven by climate in the California gnatcatcher, a flagship species for coastal sage scrub conservation - '@id': https://doi.org/10.1371/journal.pone.0257374 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85114838155 - '@type': PropertyValue propertyID: doi value: 10.1371/journal.pone.0257374 name: 'Erratum: Combining genetic and demographic monitoring better informs conservation of an endangered urban snake (PLOS ONE (2020) 15:5 (e0231744) DOI: 10.1371/journal.pone.0231744)' - '@id': https://doi.org/10.11646/zootaxa.4917.1.1 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.11646/zootaxa.4917.1.1 - '@type': PropertyValue propertyID: eid value: 2-s2.0-85099832665 name: 'Generic relationships of New World Jerusalem crickets (Orthoptera: Stenopelmatoidea:Stenopelmatinae), including all known species of Stenopelmatus' - '@id': https://doi.org/10.1002/ecs2.3689 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85113547408 - '@type': PropertyValue propertyID: doi value: 10.1002/ecs2.3689 name: "Integrating telemetry data at several scales with spatial capture\u2013\ recapture to improve density estimates" - '@id': https://doi.org/10.1371/journal.pone.0231744 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85084236691 - '@type': PropertyValue propertyID: doi value: 10.1371/journal.pone.0231744 name: Combining genetic and demographic monitoring better informs conservation of an endangered urban snake - '@id': https://doi.org/10.1007/s10592-020-01251-z '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85079469698 - '@type': PropertyValue propertyID: doi value: 10.1007/s10592-020-01251-z name: 'Genes in space: what Mojave desert tortoise genetics can tell us about landscape connectivity' - '@id': https://doi.org/10.1007/s10592-020-01269-3 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85083107840 - '@type': PropertyValue propertyID: doi value: 10.1007/s10592-020-01269-3 name: High-throughput sequencing reveals distinct regional genetic structure among remaining populations of an endangered salt marsh plant in California - '@id': https://doi.org/10.1186/s40462-020-00224-8 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85092333696 - '@type': PropertyValue propertyID: doi value: 10.1186/s40462-020-00224-8 name: Using movement to inform conservation corridor design for Mojave desert tortoise - '@id': https://doi.org/10.1038/s41598-018-37712-2 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85061054724 - '@type': PropertyValue propertyID: doi value: 10.1038/s41598-018-37712-2 name: Distinguishing recent dispersal from historical genetic connectivity in the coastal California gnatcatcher - '@id': https://doi.org/10.2744/ccb-1394.1 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85077208551 - '@type': PropertyValue propertyID: doi value: 10.2744/ccb-1394.1 name: Development of a Genotyping Protocol for Mojave Desert Tortoise Scat - '@id': https://doi.org/10.1111/evo.13868 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/evo.13868 - '@type': PropertyValue propertyID: eid value: 2-s2.0-85075073655 name: Pleistocene glacial cycles drove lineage diversification and fusion in the Yosemite toad (Anaxyrus canorus) - '@id': https://doi.org/10.1371/journal.pone.0200203 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85053476011 - '@type': PropertyValue propertyID: doi value: 10.1371/journal.pone.0200203 name: Prioritizing conserved areas threatened by wildfire and fragmentation for monitoring and management - '@id': https://doi.org/10.11646/zootaxa.4291.1.1 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-85022347298 - '@type': PropertyValue propertyID: doi value: 10.11646/zootaxa.4291.1.1 name: 'Tackling an intractable problem: Can greater taxon sampling help resolve relationships within the Stenopelmatoidea (Orthoptera: Ensifera)?' - '@id': https://doi.org/10.1007/s10592-016-0888-4 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-84989193497 - '@type': PropertyValue propertyID: doi value: 10.1007/s10592-016-0888-4 name: "A century of landscape disturbance and urbanization of the San Francisco\ \ Bay region affects the present-day genetic diversity of the California Ridgway\u2019\ s rail (Rallus obsoletus obsoletus)" - '@id': https://doi.org/10.1111/mec.14125 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/mec.14125 - '@type': PropertyValue propertyID: eid value: 2-s2.0-85018967164 name: Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert - '@id': https://doi.org/10.1655/herpetologica-d-15-00046.1 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-84981313919 - '@type': PropertyValue propertyID: doi value: 10.1655/herpetologica-d-15-00046.1 name: Historical Habitat Barriers Prevent Ring-like Genetic Continuity Throughout the Distribution of Threatened Alameda Striped Racers (Coluber lateralis euryxanthus) - '@id': https://doi.org/10.1016/j.ympev.2016.09.008 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-84989204411 - '@type': PropertyValue propertyID: doi value: 10.1016/j.ympev.2016.09.008 name: 'Lineage Diversification of Fringe-toed Lizards (Phrynosomatidae: Uma notata complex) in the Colorado Desert: Delimiting Species in the Presence of Gene Flow' - '@id': https://doi.org/10.1371/journal.pone.0165366 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-84995687637 - '@type': PropertyValue propertyID: doi value: 10.1371/journal.pone.0165366 name: 'Metabarcoding of fecal samples to determine herbivore diets: A case study of the endangered Pacific pocket mouse' - '@id': https://doi.org/10.1111/ddi.12398 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-84958965899 - '@type': PropertyValue propertyID: doi value: 10.1111/ddi.12398 name: Drifting to oblivion? Rapid genetic differentiation in an endangered lizard following habitat fragmentation and drought - '@id': https://doi.org/10.1007/s10592-015-0720-6 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-84941315459 - '@type': PropertyValue propertyID: doi value: 10.1007/s10592-015-0720-6 name: 'Defining population structure and genetic signatures of decline in the giant gartersnake (Thamnophis gigas): implications for conserving threatened species within highly altered landscapes' - '@id': https://doi.org/10.1111/mec.13176 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/mec.13176 - '@type': PropertyValue propertyID: eid value: 2-s2.0-84928354206 name: Habitat fragmentation in coastal southern California disrupts genetic connectivity in the cactus wren ( Campylorhynchus brunneicapillus ) - '@id': https://doi.org/10.3133/ofr20141134 '@type': CreativeWork identifier: '@type': PropertyValue propertyID: doi value: 10.3133/ofr20141134 name: Mapping habitat for multiple species in the Desert Southwest - '@id': https://doi.org/10.1371/journal.pone.0097494 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1371/journal.pone.0097494 - '@type': PropertyValue propertyID: eid value: 2-s2.0-84901363536 name: 'Fuzzy Boundaries: Color and Gene Flow Patterns among Parapatric Lineages of the Western Shovel-Nosed Snake and Taxonomic Implication' - '@id': https://doi.org/10.1111/eva.12067 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/eva.12067 - '@type': PropertyValue propertyID: eid value: 2-s2.0-84880580764 name: Evolutionary dynamics of a rapidly receding southern range boundary in the threatened California Red-Legged Frog ( Rana draytonii ) - '@id': https://doi.org/10.3390/d5020293 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.3390/d5020293 - '@type': PropertyValue propertyID: eid value: 2-s2.0-84880005578 name: Evolutionary Hotspots in the Mojave Desert - '@id': https://doi.org/10.3354/esr00487 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.3354/esr00487 - '@type': PropertyValue propertyID: eid value: 2-s2.0-84880022826 name: Is there room for all of us? Renewable energy and Xerospermophilus mohavensis - '@id': https://doi.org/10.1007/s11692-012-9184-5 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-84861784165 - '@type': PropertyValue propertyID: doi value: 10.1007/s11692-012-9184-5 name: 'Species Differentiation on a Dynamic Landscape: Shifts in Metapopulation Genetic Structure Using the Chronology of the Hawaiian Archipelago' - '@id': https://doi.org/10.1111/ddi.12022 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/ddi.12022 - '@type': PropertyValue propertyID: eid value: 2-s2.0-84879129460 name: Comparative phylogeography reveals deep lineages and regional evolutionary hotspots in the Mojave and Sonoran Deserts - '@id': https://doi.org/10.1111/j.1365-294x.2011.05211.x '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/j.1365-294x.2011.05211.x - '@type': PropertyValue propertyID: eid value: 2-s2.0-80052537331 name: Refugial isolation and divergence in the Narrowheaded Gartersnake species complex (Thamnophis rufipunctatus) as revealed by multilocus DNA sequence data - '@id': https://doi.org/10.1111/j.1365-294x.2011.05122.x '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/j.1365-294x.2011.05122.x - '@type': PropertyValue propertyID: eid value: 2-s2.0-79958797575 name: The value of DNA sequence data for studying landscape genetics - '@id': https://doi.org/10.1111/j.1755-0998.2010.02904.x '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-78650153258 - '@type': PropertyValue propertyID: doi value: 10.1111/j.1755-0998.2010.02904.x name: 'Genetic landscapes GIS Toolbox: tools to map patterns of genetic divergence and diversity' - '@id': https://doi.org/10.1111/j.1755-0998.2009.02522.x '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/j.1755-0998.2009.02522.x - '@type': PropertyValue propertyID: eid value: 2-s2.0-65249096115 name: Identification of co-occurring Branchinecta fairy shrimp species from encysted embryos using multiplex polymerase chain reaction - '@id': https://doi.org/10.1007/s10592-008-9733-8 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-71349086479 - '@type': PropertyValue propertyID: doi value: 10.1007/s10592-008-9733-8 name: Optimized DNA extraction methods for encysted embryos of the endangered fairy shrimp, Branchinecta sandiegonensis - '@id': https://doi.org/10.1007/s10841-008-9176-z '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-67349256436 - '@type': PropertyValue propertyID: doi value: 10.1007/s10841-008-9176-z name: "Loss of genetic connectivity and diversity in urban microreserves in\ \ a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae:\ \ Stenopelmatus n. sp. \u201Csanta monica\u201D)" - '@id': https://doi.org/10.1016/j.biocon.2008.04.009 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-44649148912 - '@type': PropertyValue propertyID: doi value: 10.1016/j.biocon.2008.04.009 name: Are hotspots of evolutionary potential adequately protected in southern California? - '@id': https://doi.org/10.1007/978-1-4020-6359-6_1650 '@type': CreativeWork identifier: '@type': PropertyValue propertyID: doi value: 10.1007/978-1-4020-6359-6_1650 name: 'Jerusalem Crickets (Orthoptera: Stenopelmatidae)' - '@id': https://doi.org/10.1007/s10592-007-9482-0 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1007/s10592-007-9482-0 - '@type': PropertyValue propertyID: eid value: 2-s2.0-55949133255 name: Molecular and phenotypic diversity in Chionactis occipitalis (Western Shovel-nosed Snake), with emphasis on the status of C. o. klauberi (Tucson Shovel-nosed Snake). - '@id': https://doi.org/10.1111/j.1365-294x.2006.03216.x '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1111/j.1365-294x.2006.03216.x - '@type': PropertyValue propertyID: eid value: 2-s2.0-33847035826 name: 'Understanding the genetic effects of recent habitat fragmentation in the context of evolutionary history: phylogeography and landscape genetics of a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus)' - '@id': https://doi.org/10.1603/0046-225x-33.5.1296 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1603/0046-225x-33.5.1296 - '@type': PropertyValue propertyID: eid value: 2-s2.0-7644223484 name: Effects of Natural Forest Fragmentation on a Hawaiian Spider Community - '@id': https://doi.org/10.1111/j.1365-294x.2004.02179.x '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: eid value: 2-s2.0-3042827189 - '@type': PropertyValue propertyID: doi value: 10.1111/j.1365-294x.2004.02179.x name: 'Influence of volcanic activity on the population genetic structure of Hawaiian Tetragnatha spiders: fragmentation, rapid population growth and the potential for accelerated evolution' - '@id': https://doi.org/10.1016/j.jip.2004.01.001 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1016/j.jip.2004.01.001 - '@type': PropertyValue propertyID: eid value: 2-s2.0-16544369791 name: "Erratum to \u201CMermithid parasitism of Hawaiian Tetragnatha spiders\ \ in a fragmented landscape\u201D [J. Invertebr. Pathol. 84 (2003) 128\u2013\ 136]" - '@id': https://doi.org/10.1016/j.jip.2003.08.004 '@type': CreativeWork identifier: - '@type': PropertyValue propertyID: doi value: 10.1016/j.jip.2003.08.004 - '@type': PropertyValue propertyID: eid value: 2-s2.0-0344098911 name: Mermithid parasitism of Hawaiian Tetragnatha spiders in a fragmented landscape '@type': Person alumniOf: - '@type': Organization alternateName: Ecology, Behavior, and Evolution identifier: '@type': PropertyValue propertyID: RINGGOLD value: '8784' name: University of California San Diego - '@type': Organization alternateName: Environmental Science, Policy and Management identifier: '@type': PropertyValue propertyID: RINGGOLD value: '1438' name: University of California Berkeley - '@type': Organization alternateName: Zoology identifier: '@type': PropertyValue propertyID: RINGGOLD value: '3949' name: University of Hawai'i at Manoa familyName: Vandergast givenName: Amy G. identifier: '@type': PropertyValue propertyID: Scopus Author ID value: '6507814965' mainEntityOfPage: https://orcid.org/0000-0002-7835-6571
USGS Staff Profile:
'@context': https://schema.org '@type': Person affiliation: [] description: - '@type': TextObject abstract: Supervisory Research Geneticist with the Western Ecological Research Center (WERC) additionalType: short description - '@type': TextObject abstract: Dr. Amy Vandergast is a Research Geneticist with the Western Ecological Research Center. additionalType: staff profile page introductory statement - '@type': TextObject abstract: She develops and leads a research program inConservation and Landscape Genetics and Genomics. Broadly, she seeks to understand how natural and human induced landscape and environmental change impact populations, and shape evolutionary potential. Dr. Vandergast's laboratory group approaches genetic research to inform conservation in three focal areas. 1) At the population level, the team estimates important population parameters such as effective migration (or gene flow) and the number of breeding adults (or effective population size), and quantifies the impacts of landscape changes and disturbance on these parameters. This work informs individual species management. 2) Dr. Vandergast's lab also merges genetic data with mapping and modeling tools to inform biodiversity conservation efforts. Specifically, they define evolutionary significant units within species, reveal evolutionary mechanisms responsible for diversification, and identify regions with high genetic diversity for protection. 3) The team develops genetic approaches for species detection, individual mark recapture, and studies ecological associations (such as predator/prey relationships). These techniques often increase monitoring effectiveness and efficiency when replacing or combining with standard field methodologies.RESEARCH INTERESTSLandscape geneticsPopulation geneticsConservation biologyHabitat fragmentationTerrestrial invertebrate ecology and evolutionLinkage design and monitoring additionalType: personal statement email: avandergast@usgs.gov hasCredential: - '@type': EducationalOccupationalCredential name: 'Ph.D., Environmental Science, Policy & Management: Division of Insect Biology, University of California, Berkeley (2002)' - '@type': EducationalOccupationalCredential name: M.S., Department of Zoology; Ecology, Evolution & Conservation Biology, University of Hawaii, Manoa (1998) - '@type': EducationalOccupationalCredential name: B.S., Ecology, Behavior and Evolution, University of California, San Diego (1995) hasOccupation: - '@type': OrganizationalRole affiliatedOrganization: '@type': Organization name: Western Ecological Research Center (WERC) url: https://www.usgs.gov/centers/werc roleName: Supervisory Research Geneticist startDate: '2024-05-12T16:03:06.643249' - '@type': Occupation additionalType: self-claimed professional experience name: Geneticist. USGS Western Ecological Research Center, San Diego Field Station (2004-Present) - '@type': Occupation additionalType: self-claimed professional experience name: Adjunct Research Professor. San Diego State University, Department of Biology (2002-Present) - '@type': Occupation additionalType: self-claimed professional experience name: Lecturer. San Diego State University, Department of Biology and Cuyamaca College Department of Biology (2002) identifier: - '@type': PropertyValue propertyID: GeoKB value: https://geokb.wikibase.cloud/entity/Q49934 - '@type': PropertyValue propertyID: ORCID value: 0000-0002-7835-6571 jobTitle: Supervisory Research Geneticist knowsAbout: [] memberOf: '@type': OrganizationalRole member: '@type': Organization name: U.S. Geological Survey name: staff member startDate: '2024-05-12T16:03:06.640488' name: Amy Vandergast url: https://www.usgs.gov/staff-profiles/amy-vandergast