{
"USGS Publications Warehouse": { "@context": "https://schema.org", "@type": "Article", "additionalType": "Journal Article", "name": "Dynamic population models with temporal preferential sampling to infer phenology", "identifier": [ { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse IndexID", "value": "70246237", "url": "https://pubs.usgs.gov/publication/70246237" }, { "@type": "PropertyValue", "propertyID": "USGS Publications Warehouse Internal ID", "value": 70246237 }, { "@type": "PropertyValue", "propertyID": "DOI", "value": "10.1007/s13253-023-00552-3", "url": "https://doi.org/10.1007/s13253-023-00552-3" } ], "journal": { "@type": "Periodical", "name": "Journal of Agricultural, Biological, and Environmental Statistics", "volumeNumber": "28", "issueNumber": null }, "inLanguage": "en", "isPartOf": [ { "@type": "CreativeWorkSeries", "name": "Journal of Agricultural, Biological, and Environmental Statistics" } ], "datePublished": "2023", "dateModified": "2023-12-20", "abstract": "To study population dynamics, ecologists and wildlife biologists typically use relative abundance data, which may be subject to temporal preferential sampling. Temporal preferential sampling occurs when the times at which observations are made and the latent process of interest are conditionally dependent. To account for preferential sampling, we specify a Bayesian hierarchical abundance model that considers the dependence between observation times and the ecological process of interest. The proposed model improves relative abundance estimates during periods of infrequent observation and accounts for temporal preferential sampling in discrete time. Additionally, our model facilitates posterior inference for population growth rates and mechanistic phenometrics. We apply our model to analyze both simulated data and mosquito count data collected by the National Ecological Observatory Network. In the second case study, we characterize the population growth rate and relative abundance of several mosquito species in the\u00a0Aedes\u00a0genus. Supplementary materials accompanying this paper appear on-line.", "description": "18 p.", "publisher": { "@type": "Organization", "name": "Springer" }, "author": [ { "@type": "Person", "name": "Schwob, Michael", "givenName": "Michael", "familyName": "Schwob", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0001-6367-2013", "url": "https://orcid.org/0000-0001-6367-2013" }, "affiliation": [ { "@type": "Organization", "name": "University of Texas at Austin" } ] }, { "@type": "Person", "name": "Hooten, Mevin B.", "givenName": "Mevin B.", "familyName": "Hooten", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0002-1614-723X", "url": "https://orcid.org/0000-0002-1614-723X" }, "affiliation": [ { "@type": "Organization", "name": "University of Texas at Austin" } ] }, { "@type": "Person", "name": "Mcdevitt-Galles, Travis", "givenName": "Travis", "familyName": "Mcdevitt-Galles", "identifier": { "@type": "PropertyValue", "propertyID": "ORCID", "value": "0000-0002-4929-5431", "url": "https://orcid.org/0000-0002-4929-5431" }, "affiliation": [ { "@type": "Organization", "name": "National Wildlife Health Center", "url": "https://www.usgs.gov/centers/nwhc" } ] } ], "funder": [ { "@type": "Organization", "name": "National Wildlife Health Center", "url": "https://www.usgs.gov/centers/nwhc" } ] }, "OpenAlex": { "_id": "https://openalex.org/w4380182324", "abstract_inverted_index": { "To": [ 0, 42 ], "study": [ 1 ], "population": [ 2, 95, 129 ], "dynamics,": [ 3 ], "ecologists": [ 4 ], "and": [ 5, 33, 61, 79, 98, 110, 132 ], "wildlife": [ 6 ], "biologists": [ 7 ], "typically": [ 8 ], "use": [ 9 ], "relative": [ 10, 71, 133 ], "abundance": [ 11, 52, 72, 134 ], "data,": [ 12 ], "which": [ 13, 29 ], "may": [ 14 ], "be": [ 15 ], "subject": [ 16 ], "to": [ 17, 105 ], "temporal": [ 18, 82 ], "preferential": [ 19, 22, 45, 83 ], "sampling.": [ 20 ], "Temporal": [ 21 ], "sampling": [ 23, 84 ], "occurs": [ 24 ], "when": [ 25 ], "the": [ 26, 34, 56, 62, 116, 122, 128, 140 ], "times": [ 27, 60 ], "at": [ 28 ], "observations": [ 30 ], "are": [ 31, 39 ], "made": [ 32 ], "latent": [ 35 ], "process": [ 36, 64 ], "of": [ 37, 65, 76, 135 ], "interest": [ 38 ], "conditionally": [ 40 ], "dependent.": [ 41 ], "account": [ 43 ], "for": [ 44, 81, 94 ], "sampling,": [ 46 ], "we": [ 47, 126 ], "specify": [ 48 ], "a": [ 49 ], "Bayesian": [ 50 ], "hierarchical": [ 51 ], "model": [ 53, 69, 90, 104 ], "that": [ 54 ], "considers": [ 55 ], "dependence": [ 57 ], "between": [ 58 ], "observation": [ 59, 78 ], "ecological": [ 63 ], "interest.": [ 66 ], "The": [ 67 ], "proposed": [ 68 ], "improves": [ 70 ], "estimates": [ 73 ], "during": [ 74 ], "periods": [ 75 ], "infrequent": [ 77 ], "accounts": [ 80 ], "in": [ 85, 139 ], "discrete": [ 86 ], "time.": [ 87 ], "Additionally,": [ 88 ], "our": [ 89, 103 ], "facilitates": [ 91 ], "posterior": [ 92 ], "inference": [ 93 ], "growth": [ 96, 130 ], "rates": [ 97 ], "mechanistic": [ 99 ], "phenometrics.": [ 100 ], "We": [ 101 ], "apply": [ 102 ], "analyze": [ 106 ], "both": [ 107 ], "simulated": [ 108 ], "data": [ 109, 113 ], "mosquito": [ 111, 137 ], "count": [ 112 ], "collected": [ 114 ], "by": [ 115 ], "National": [ 117 ], "Ecological": [ 118 ], "Observatory": [ 119 ], "Network.": [ 120 ], "In": [ 121 ], "second": [ 123 ], "case": [ 124 ], "study,": [ 125 ], "characterize": [ 127 ], "rate": [ 131 ], "several": [ 136 ], "species": [ 138 ], "Aedes": [ 141 ], "genus.": [ 142 ], "Supplementary": [ 143 ], "materials": [ 144 ], "accompanying": [ 145 ], "this": [ 146 ], "paper": [ 147 ], "appear": [ 148 ], "on-line.": [ 149 ] }, "apc_list": null, "apc_paid": null, "authorships": [ { "author_position": "first", "author": { "id": "https://openalex.org/A5053277299", "display_name": "Michael R. Schwob", "orcid": "https://orcid.org/0000-0001-6367-2013" }, "institutions": [ { "id": "https://openalex.org/I86519309", "display_name": "The University of Texas at Austin", "ror": "https://ror.org/00hj54h04", "country_code": "US", "type": "education", "lineage": [ "https://openalex.org/I86519309" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Michael R. Schwob", "raw_affiliation_strings": [ "Department of Statistics and Data Sciences, The University of Texas at Austin, Austin, TX, USA" ], "affiliations": [ { "raw_affiliation_string": "Department of Statistics and Data Sciences, The University of Texas at Austin, Austin, TX, USA", "institution_ids": [ "https://openalex.org/I86519309" ] } ] }, { "author_position": "middle", "author": { "id": "https://openalex.org/A5082476482", "display_name": "Mevin B. Hooten", "orcid": "https://orcid.org/0000-0002-1614-723X" }, "institutions": [ { "id": "https://openalex.org/I86519309", "display_name": "The University of Texas at Austin", "ror": "https://ror.org/00hj54h04", "country_code": "US", "type": "education", "lineage": [ "https://openalex.org/I86519309" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Mevin B. Hooten", "raw_affiliation_strings": [ "Department of Statistics and Data Sciences, The University of Texas at Austin, Austin, TX, USA" ], "affiliations": [ { "raw_affiliation_string": "Department of Statistics and Data Sciences, The University of Texas at Austin, Austin, TX, USA", "institution_ids": [ "https://openalex.org/I86519309" ] } ] }, { "author_position": "last", "author": { "id": "https://openalex.org/A5032228539", "display_name": "Travis McDevitt\u2010Galles", "orcid": "https://orcid.org/0000-0002-4929-5431" }, "institutions": [ { "id": "https://openalex.org/I4210131920", "display_name": "National Wildlife Health Center", "ror": "https://ror.org/038d10y34", "country_code": "US", "type": "healthcare", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249", "https://openalex.org/I4210131920" ] }, { "id": "https://openalex.org/I1286329397", "display_name": "United States Geological Survey", "ror": "https://ror.org/035a68863", "country_code": "US", "type": "government", "lineage": [ "https://openalex.org/I1286329397", "https://openalex.org/I1335927249" ] } ], "countries": [ "US" ], "is_corresponding": false, "raw_author_name": "Travis McDevitt-Galles", "raw_affiliation_strings": [ "National Wildlife Health Center, United States Geological Survey, Madison, WI, USA" ], "affiliations": [ { "raw_affiliation_string": "National Wildlife Health Center, United States Geological Survey, Madison, WI, USA", "institution_ids": [ "https://openalex.org/I4210131920", "https://openalex.org/I1286329397" ] } ] } ], "best_oa_location": { "is_oa": true, "landing_page_url": "https://arxiv.org/abs/2212.05180", "pdf_url": "https://arxiv.org/pdf/2212.05180", "source": { "id": "https://openalex.org/S4306400194", "display_name": "arXiv (Cornell University)", "issn_l": null, "issn": null, "is_oa": true, "is_in_doaj": false, "is_core": false, "host_organization": "https://openalex.org/I205783295", "host_organization_name": "Cornell University", "host_organization_lineage": [ "https://openalex.org/I205783295" ], "host_organization_lineage_names": [ "Cornell University" ], "type": "repository" }, "license": null, "license_id": null, "version": "submittedVersion", "is_accepted": false, "is_published": false }, "biblio": { "volume": "28", "issue": "4", "first_page": "774", "last_page": "791" }, "citation_normalized_percentile": { "value": 0.67999, "is_in_top_1_percent": false, "is_in_top_10_percent": false }, "cited_by_api_url": "https://api.openalex.org/works?filter=cites:W4380182324", "cited_by_count": 1, "cited_by_percentile_year": { "min": 73, "max": 84 }, "concepts": [ { "id": "https://openalex.org/C140779682", "wikidata": "https://www.wikidata.org/wiki/Q210868", "display_name": "Sampling (signal processing)", "level": 3, "score": 0.5868161 }, { "id": "https://openalex.org/C51417038", "wikidata": "https://www.wikidata.org/wiki/Q272737", "display_name": "Phenology", "level": 2, "score": 0.5517667 }, { "id": "https://openalex.org/C2908647359", "wikidata": "https://www.wikidata.org/wiki/Q2625603", "display_name": "Population", "level": 2, "score": 0.5150192 }, { "id": "https://openalex.org/C105795698", "wikidata": "https://www.wikidata.org/wiki/Q12483", "display_name": "Statistics", "level": 1, "score": 0.48855028 }, { "id": "https://openalex.org/C149782125", "wikidata": "https://www.wikidata.org/wiki/Q160039", "display_name": "Econometrics", "level": 1, "score": 0.43350506 }, { "id": "https://openalex.org/C41008148", "wikidata": "https://www.wikidata.org/wiki/Q21198", "display_name": "Computer science", "level": 0, "score": 0.34346473 }, { "id": "https://openalex.org/C33923547", "wikidata": "https://www.wikidata.org/wiki/Q395", "display_name": "Mathematics", "level": 0, "score": 0.28672618 }, { "id": "https://openalex.org/C18903297", "wikidata": "https://www.wikidata.org/wiki/Q7150", "display_name": "Ecology", "level": 1, "score": 0.14460617 }, { "id": "https://openalex.org/C149923435", "wikidata": "https://www.wikidata.org/wiki/Q37732", "display_name": "Demography", "level": 1, "score": 0.1327638 }, { "id": "https://openalex.org/C86803240", "wikidata": "https://www.wikidata.org/wiki/Q420", "display_name": "Biology", "level": 0, "score": 0.11104879 }, { "id": "https://openalex.org/C106131492", "wikidata": "https://www.wikidata.org/wiki/Q3072260", "display_name": "Filter (signal processing)", "level": 2, "score": 0.0 }, { "id": "https://openalex.org/C144024400", "wikidata": "https://www.wikidata.org/wiki/Q21201", "display_name": "Sociology", "level": 0, "score": 0.0 }, { "id": "https://openalex.org/C31972630", "wikidata": "https://www.wikidata.org/wiki/Q844240", "display_name": "Computer vision", "level": 1, "score": 0.0 } ], "corresponding_author_ids": [], "corresponding_institution_ids": [], "countries_distinct_count": 1, "counts_by_year": [ { "year": 2023, "cited_by_count": 1 } ], "created_date": "2023-06-11", "datasets": [], "display_name": "Dynamic Population Models with Temporal Preferential Sampling to Infer Phenology", "doi": "https://doi.org/10.1007/s13253-023-00552-3", "fwci": 0.616, "grants": [ { "funder": "https://openalex.org/F4320306076", "funder_display_name": "National Science Foundation", "award_id": "Graduate Research Fellowship" } ], "has_fulltext": false, "id": "https://openalex.org/W4380182324", "ids": { "openalex": "https://openalex.org/W4380182324", "doi": "https://doi.org/10.1007/s13253-023-00552-3" }, "indexed_in": [ "crossref" ], "institutions_distinct_count": 3, "is_paratext": false, "is_retracted": false, "keywords": [ { "id": "https://openalex.org/keywords/model-selection", "display_name": "Model Selection", "score": 0.558387 }, { "id": "https://openalex.org/keywords/habitat-selection", "display_name": "Habitat Selection", "score": 0.557257 } ], "language": "en", "locations": [ { "is_oa": false, "landing_page_url": "https://doi.org/10.1007/s13253-023-00552-3", "pdf_url": null, "source": { "id": "https://openalex.org/S185969502", "display_name": "Journal of Agricultural Biological and Environmental Statistics", "issn_l": "1085-7117", "issn": [ "1085-7117", "1537-2693" ], "is_oa": false, "is_in_doaj": false, "is_core": true, "host_organization": "https://openalex.org/P4310319900", "host_organization_name": "Springer Science+Business Media", "host_organization_lineage": [ "https://openalex.org/P4310319965", "https://openalex.org/P4310319900" ], "host_organization_lineage_names": [ "Springer Nature", "Springer Science+Business Media" ], "type": "journal" }, "license": null, "license_id": null, "version": null, "is_accepted": false, "is_published": false }, { "is_oa": true, "landing_page_url": "https://arxiv.org/abs/2212.05180", "pdf_url": "https://arxiv.org/pdf/2212.05180", "source": { "id": "https://openalex.org/S4306400194", "display_name": "arXiv (Cornell University)", "issn_l": null, "issn": null, "is_oa": true, "is_in_doaj": false, "is_core": false, "host_organization": "https://openalex.org/I205783295", "host_organization_name": "Cornell University", "host_organization_lineage": [ "https://openalex.org/I205783295" ], "host_organization_lineage_names": [ "Cornell University" ], "type": "repository" }, "license": null, "license_id": null, "version": "submittedVersion", "is_accepted": false, "is_published": false } ], "locations_count": 2, "mesh": [], "ngrams_url": "https://api.openalex.org/works/W4380182324/ngrams", "open_access": { "is_oa": true, "oa_status": "green", "oa_url": "https://arxiv.org/pdf/2212.05180", "any_repository_has_fulltext": true }, "primary_location": { "is_oa": false, "landing_page_url": "https://doi.org/10.1007/s13253-023-00552-3", "pdf_url": null, "source": { "id": "https://openalex.org/S185969502", "display_name": "Journal of Agricultural Biological and Environmental Statistics", "issn_l": "1085-7117", "issn": [ "1085-7117", "1537-2693" ], "is_oa": false, "is_in_doaj": false, "is_core": true, "host_organization": "https://openalex.org/P4310319900", "host_organization_name": "Springer Science+Business Media", "host_organization_lineage": [ "https://openalex.org/P4310319965", "https://openalex.org/P4310319900" ], "host_organization_lineage_names": [ "Springer Nature", "Springer Science+Business Media" ], "type": "journal" }, "license": null, "license_id": null, "version": null, "is_accepted": false, "is_published": false }, "primary_topic": { "id": "https://openalex.org/T11913", "display_name": "Ecological Impact of Invasive Species on Islands", "score": 0.9765, "subfield": { "id": "https://openalex.org/subfields/2303", "display_name": "Ecology" }, "field": { "id": "https://openalex.org/fields/23", "display_name": "Environmental Science" }, "domain": { "id": "https://openalex.org/domains/3", "display_name": "Physical Sciences" } }, "publication_date": "2023-06-10", "publication_year": 2023, "referenced_works": [ "https://openalex.org/W1500794765", "https://openalex.org/W1926208446", "https://openalex.org/W2028669920", "https://openalex.org/W2052730900", "https://openalex.org/W2074051766", "https://openalex.org/W2077573539", "https://openalex.org/W2077590806", "https://openalex.org/W2083875149", "https://openalex.org/W2090715958", "https://openalex.org/W2093393699", "https://openalex.org/W2093516141", "https://openalex.org/W2102071582", "https://openalex.org/W2106964024", "https://openalex.org/W2107858042", "https://openalex.org/W2108306139", "https://openalex.org/W2111111567", "https://openalex.org/W2117228373", "https://openalex.org/W2120575449", "https://openalex.org/W2155115177", "https://openalex.org/W2159549867", "https://openalex.org/W2166043141", "https://openalex.org/W2168419448", "https://openalex.org/W2230279048", "https://openalex.org/W2242437964", "https://openalex.org/W2316435197", "https://openalex.org/W2418090461", "https://openalex.org/W2488709105", "https://openalex.org/W2582457290", "https://openalex.org/W2768333610", "https://openalex.org/W2768665007", "https://openalex.org/W2794704013", "https://openalex.org/W2945743861", "https://openalex.org/W2963375044", "https://openalex.org/W2969219198", "https://openalex.org/W2972513415", "https://openalex.org/W3121757393", "https://openalex.org/W3149410731", "https://openalex.org/W3172786784", "https://openalex.org/W3199464668", "https://openalex.org/W4200508330", "https://openalex.org/W4210616753" ], "referenced_works_count": 41, "related_works": [ "https://openalex.org/W96071508", "https://openalex.org/W4206027277", "https://openalex.org/W3128824461", "https://openalex.org/W3107697994", "https://openalex.org/W2388003193", "https://openalex.org/W2373524250", "https://openalex.org/W2367450255", "https://openalex.org/W2243549226", "https://openalex.org/W2184048517", "https://openalex.org/W2156132268" ], "sustainable_development_goals": [ { "display_name": "Zero hunger", "score": 0.57, "id": "https://metadata.un.org/sdg/2" } ], "title": "Dynamic Population Models with Temporal Preferential Sampling to Infer Phenology", "topics": [ { "id": "https://openalex.org/T11913", "display_name": "Ecological Impact of Invasive Species on Islands", "score": 0.9765, "subfield": { "id": "https://openalex.org/subfields/2303", "display_name": "Ecology" }, "field": { "id": "https://openalex.org/fields/23", "display_name": "Environmental Science" }, "domain": { "id": "https://openalex.org/domains/3", "display_name": "Physical Sciences" } }, { "id": "https://openalex.org/T10089", "display_name": "Avian Ecology and Climate Change Impacts", "score": 0.9765, "subfield": { "id": "https://openalex.org/subfields/2303", "display_name": "Ecology" }, "field": { "id": "https://openalex.org/fields/23", "display_name": "Environmental Science" }, "domain": { "id": "https://openalex.org/domains/3", "display_name": "Physical Sciences" } }, { "id": "https://openalex.org/T10199", "display_name": "Wildlife Ecology and Conservation Biology", "score": 0.9643, "subfield": { "id": "https://openalex.org/subfields/2303", "display_name": "Ecology" }, "field": { "id": "https://openalex.org/fields/23", "display_name": "Environmental Science" }, "domain": { "id": "https://openalex.org/domains/3", "display_name": "Physical Sciences" } } ], "type": "article", "type_crossref": "journal-article", "updated_date": "2024-08-13T12:01:04.725065", "versions": [] }
}